DNA topoisomerases: Advances in understanding of cellular roles and multi‐protein complexes via structure‐function analysis

SJ McKie, KC Neuman, A Maxwell - Bioessays, 2021 - Wiley Online Library
DNA topoisomerases, capable of manipulating DNA topology, are ubiquitous and
indispensable for cellular survival due to the numerous roles they play during DNA …

All tangled up: how cells direct, manage and exploit topoisomerase function

SM Vos, EM Tretter, BH Schmidt… - Nature reviews Molecular …, 2011 - nature.com
Topoisomerases are complex molecular machines that modulate DNA topology to maintain
chromosome superstructure and integrity. Although capable of stand-alone activity in vitro …

Comparative Gene Expression Profiles Following UV Exposure in Wild-Type and SOS-Deficient Escherichia coli

J Courcelle, A Khodursky, B Peter, PO Brown… - Genetics, 2001 - academic.oup.com
The SOS response in UV-irradiated Escherichia coli includes the upregulation of several
dozen genes that are negatively regulated by the LexA repressor. Using DNA microarrays …

Persisters: a distinct physiological state of E. coli

D Shah, Z Zhang, AB Khodursky, N Kaldalu, K Kurg… - BMC microbiology, 2006 - Springer
Background Bacterial populations contain persisters, phenotypic variants that constitute
approximately 1% of cells in stationary phase and biofilm cultures. Multidrug tolerance of …

Replication dynamics of the yeast genome

MK Raghuraman, EA Winzeler, D Collingwood, S Hunt… - science, 2001 - science.org
Oligonucleotide microarrays were used to map the detailed topography of chromosome
replication in the budding yeast Saccharomyces cerevisiae. The times of replication of …

Inhibition of mutation and combating the evolution of antibiotic resistance

RT Cirz, JK Chin, DR Andes, V de Crécy-Lagard… - PLoS …, 2005 - journals.plos.org
The emergence of drug-resistant bacteria poses a serious threat to human health. In the
case of several antibiotics, including those of the quinolone and rifamycin classes, bacteria …

Organization and segregation of bacterial chromosomes

X Wang, PM Llopis, DZ Rudner - Nature Reviews Genetics, 2013 - nature.com
The bacterial chromosome must be compacted more than 1,000-fold to fit into the
compartment in which it resides. How it is condensed, organized and ultimately segregated …

Mechanistic and Structural Basis for the Actions of the Antibacterial Gepotidacin against Staphylococcus aureus Gyrase

EG Gibson, B Bax, PF Chan, N Osheroff - ACS infectious diseases, 2019 - ACS Publications
Gepotidacin is a first-in-class triazaacenaphthylene novel bacterial topoisomerase inhibitor
(NBTI). The compound has successfully completed phase II trials for the treatment of acute …

Genome Sequence of Yersinia pestis KIM

W Deng, V Burland, G Plunkett III, A Boutin… - 2002 - Am Soc Microbiol
We present the complete genome sequence of Yersinia pestis KIM, the etiologic agent of
bubonic and pneumonic plague. The strain KIM, biovar Mediaevalis, is associated with the …

Fluoroquinolones: action and resistance

K Drlica, M Malik - Current topics in medicinal chemistry, 2003 - ingentaconnect.com
Fluoroquinolones trap gyrase and topoisomerase IV on DNA as ternary complexes that
block the movement of replication forks and transcription complexes. Studies with resistant …