Precision RNA base editing with engineered and endogenous effectors

LS Pfeiffer, T Stafforst - Nature Biotechnology, 2023 - nature.com
RNA base editing refers to the rewriting of genetic information within an intact RNA molecule
and serves various functions, such as evasion of the endogenous immune system and …

Engineering synthetic RNA devices for cell control

PB Dykstra, M Kaplan, CD Smolke - Nature Reviews Genetics, 2022 - nature.com
The versatility of RNA in sensing and interacting with small molecules, proteins and other
nucleic acids while encoding genetic instructions for protein translation makes it a powerful …

Inducible and reversible RNA N6-methyladenosine editing

H Shi, Y Xu, N Tian, M Yang, FS Liang - Nature communications, 2022 - nature.com
RNA modifications, including N6-methyladenosine (m6A), have been reported to regulate
fundamental RNA processes and properties, and directly linked to various human diseases …

Programmable RNA base editing via targeted modifications

J Song, Y Zhuang, C Yi - Nature Chemical Biology, 2024 - nature.com
Clustered regularly interspaced short palindromic repeats (CRISPR)-based genome editors
are powerful tools in biology and hold great promise for the treatment of human diseases …

A methylation-and immune-related lncRNA signature to predict ovarian cancer outcome and uncover mechanisms of chemoresistance

L Chen, W Gao, L Lin, C Sha, T Li, Q Chen… - Journal of Ovarian …, 2023 - Springer
Tumor-associated lncRNAs regulated by epigenetic modification switches mediate immune
escape and chemoresistance in ovarian cancer (OC). However, the underlying mechanisms …

RNA-targeting strategies as a platform for ocular gene therapy

S Kumar, LE Fry, JH Wang, KR Martin… - Progress in Retinal and …, 2023 - Elsevier
Genetic medicine is offering hope as new therapies are emerging for many previously
untreatable diseases. The eye is at the forefront of these advances, as exemplified by the …

[HTML][HTML] Context-aware synthetic biology by controller design: Engineering the mammalian cell

N Shakiba, RD Jones, R Weiss, D Del Vecchio - Cell systems, 2021 - cell.com
The rise of systems biology has ushered a new paradigm: the view of the cell as a system
that processes environmental inputs to drive phenotypic outputs. Synthetic biology provides …

[HTML][HTML] Advance trends in targeting homology-directed repair for accurate gene editing: An inclusive review of small molecules and modified CRISPR-Cas9 systems

F Shams, H Bayat, O Mohammadian, S Mahboudi… - BioImpacts …, 2022 - ncbi.nlm.nih.gov
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Introduction: Clustered regularly interspaced short palindromic repeat and its associated …

A split CRISPR/Cas13b system for conditional RNA regulation and editing

Y Xu, N Tian, H Shi, C Zhou, Y Wang… - Journal of the American …, 2023 - ACS Publications
The CRISPR/Cas13b system has been demonstrated as a robust tool for versatile RNA
studies and relevant applications. New strategies enabling precise control of …

NLDock: A fast nucleic acid–ligand docking algorithm for modeling RNA/DNA–ligand complexes

Y Feng, K Zhang, Q Wu, SY Huang - Journal of Chemical …, 2021 - ACS Publications
Nucleic acid–ligand interactions play an important role in numerous cellular processes such
as gene function expression and regulation. Therefore, nucleic acids such as RNAs have …