Advances in electronic phenotyping: from rule-based definitions to machine learning models

JM Banda, M Seneviratne… - Annual review of …, 2018 - annualreviews.org
With the widespread adoption of electronic health records (EHRs), large repositories of
structured and unstructured patient data are becoming available to conduct observational …

Electronic health records-driven phenotyping: challenges, recent advances, and perspectives

J Pathak, AN Kho, JC Denny - Journal of the American Medical …, 2013 - academic.oup.com
With the completion of the Human Genome Project1 as well as recent advances in genomic
science and comparative biological studies, a new era of individualized medicine is evolving …

Natural language processing to extract symptoms of severe mental illness from clinical text: the Clinical Record Interactive Search Comprehensive Data Extraction …

RG Jackson, R Patel, N Jayatilleke, A Kolliakou… - BMJ open, 2017 - bmjopen.bmj.com
Objectives We sought to use natural language processing to develop a suite of language
models to capture key symptoms of severe mental illness (SMI) from clinical text, to facilitate …

Semantic web in healthcare: a systematic literature review of application, research gap, and future research avenues

AKMB Haque, BM Arifuzzaman… - … Journal of Clinical …, 2022 - Wiley Online Library
Today, healthcare has become one of the largest and most fast‐paced industries due to the
rapid development of digital healthcare technologies. The fundamental thing to enhance …

Negation's not solved: generalizability versus optimizability in clinical natural language processing

S Wu, T Miller, J Masanz, M Coarr, S Halgrim… - PloS one, 2014 - journals.plos.org
A review of published work in clinical natural language processing (NLP) may suggest that
the negation detection task has been “solved.” This work proposes that an optimizable …

Ontology-based data integration between clinical and research systems

S Mate, F Köpcke, D Toddenroth, M Martin… - PloS one, 2015 - journals.plos.org
Data from the electronic medical record comprise numerous structured but uncoded ele-
ments, which are not linked to standard terminologies. Reuse of such data for secondary …

Knowledge graph-enabled cancer data analytics

SMS Hasan, D Rivera, XC Wu… - IEEE journal of …, 2020 - ieeexplore.ieee.org
Cancer registries collect unstructured and structured cancer data for surveillance purposes
which provide important insights regarding cancer characteristics, treatments, and …

A French clinical corpus with comprehensive semantic annotations: development of the Medical Entity and Relation LIMSI annOtated Text corpus (MERLOT)

L Campillos, L Deléger, C Grouin, T Hamon… - Language Resources …, 2018 - Springer
Quality annotated resources are essential for Natural Language Processing. The objective
of this work is to present a corpus of clinical narratives in French annotated for linguistic …

EHR-oriented knowledge graph system: toward efficient utilization of non-used information buried in routine clinical practice

Y Shang, Y Tian, M Zhou, T Zhou, K Lyu… - IEEE Journal of …, 2021 - ieeexplore.ieee.org
Non-used clinical information has negative implications on healthcare quality. Clinicians pay
priority attention to clinical information relevant to their specialties during routine clinical …

Towards achieving semantic interoperability of clinical study data with FHIR

H Leroux, A Metke-Jimenez, MJ Lawley - Journal of biomedical semantics, 2017 - Springer
Background Observational clinical studies play a pivotal role in advancing medical
knowledge and patient healthcare. To lessen the prohibitive costs of conducting these …