The effect of berry consumption on oxidative stress biomarkers: a systematic review of randomized controlled trials in humans

KS Stote, G Burns, K Mears, M Sweeney, C Blanton - antioxidants, 2023 - mdpi.com
Bioactive compounds in berries may scavenge reactive oxygen and nitrogen species by
donating electrons to free radicals, thereby protecting DNA, proteins, and lipids from …

Chemical cross-linking and mass spectrometry enabled systems-level structural biology

L Botticelli, AA Bakhtina, NK Kaiser, A Keller… - Current Opinion in …, 2024 - Elsevier
Structural information on protein–protein interactions (PPIs) is essential for improved
understanding of regulatory interactome networks that confer various physiological and …

Age‐related changes of skeletal muscle metabolic response to contraction are also sex‐dependent

MD Campbell, D Djukovic, D Raftery… - The Journal of …, 2023 - Wiley Online Library
Mitochondria adapt to increased energy demands during muscle contraction by acutely
altering metabolite fluxes and substrate oxidation. With age, an impaired mitochondrial …

SubCELL: the landscape of subcellular compartment-specific molecular interactions

Y Zhang, W Jiang, T Li, H Xu, Y Zhu… - Nucleic Acids …, 2024 - academic.oup.com
The subcellular compartment-specific molecular interactions (SCSIs) are the building blocks
for most molecular functions, biological processes and disease pathogeneses. Extensive …

Studying Protein–Ligand Interactions by Protein Denaturation and Quantitative Cross-Linking Mass Spectrometry

M Mathay, A Keller, JE Bruce - Analytical Chemistry, 2023 - ACS Publications
Recently, several mass spectrometry methods have utilized protein structural stability for the
quantitative study of protein–ligand engagement. These protein-denaturation approaches …

Combining quantitative proteomics and interactomics for a deeper insight into molecular differences between human cell lines

AA Bakhtina, HH Wippel, JD Chavez… - Journal of Proteome …, 2024 - ACS Publications
In modern biomedical research, cultivable cell lines are an indispensable tool, and the
selection of cell lines that exhibit specific functional profiles is often critical to success …

Higher-order structural Organization of the mitochondrial proteome Charted by in situ cross-linking mass spectrometry

JF Hevler, AJR Heck - Molecular & Cellular Proteomics, 2023 - ASBMB
Mitochondria are densely packed with proteins, of which most are involved physically or
more transiently in protein–protein interactions (PPIs). Mitochondria host among others all …

Intra-organ cell specific mitochondrial quantitative interactomics

AA Bakhtina, MD Campbell, BD Sibley… - bioRxiv, 2024 - biorxiv.org
Almost every organ consists of many cell types, each with its unique functions. Proteomes of
these cell types are thus unique too. But it is reasonable to assume that interactome (inter …

Age and sex dependent effects of metabolic response to muscle contraction

MD Campbell, D Djukovic, D Raftery, DJ Marcinek - bioRxiv, 2023 - biorxiv.org
Sarcopenia, the age-related loss of muscle mass and function, contributes to decreased
quality of life in the elderly and increased healthcare costs. Decreased skeletal muscle …

Application of Quantitative Cross-Linking Mass Spectrometry Methods to Study Interactome Differences

A Bakhtina - 2024 - search.proquest.com
Proteins carry out the vast majority of biological function inside living cells. They do so by
changing their shapes, interacting with one another and other molecules such as DNA and …