Hamiltonian systems and optimal control in computational anatomy: 100 years since D'Arcy Thompson

MI Miller, A Trouvé, L Younes - Annual review of biomedical …, 2015 - annualreviews.org
The Computational Anatomy project is the morphome-scale study of shape and form, which
we model as an orbit under diffeomorphic group action. Metric comparison calculates the …

[图书][B] Shapes and diffeomorphisms

L Younes - 2010 - Springer
Implicit representations can provide simple descriptions of relatively complex shapes and
can in many cases be a good choice when designing stable shape processing algorithms …

Morphometry of anatomical shape complexes with dense deformations and sparse parameters

S Durrleman, M Prastawa, N Charon, JR Korenberg… - NeuroImage, 2014 - Elsevier
We propose a generic method for the statistical analysis of collections of anatomical shape
complexes, namely sets of surfaces that were previously segmented and labeled in a group …

Accurate point cloud registration with robust optimal transport

Z Shen, J Feydy, P Liu, AH Curiale… - Advances in …, 2021 - proceedings.neurips.cc
This work investigates the use of robust optimal transport (OT) for shape matching.
Specifically, we show that recent OT solvers improve both optimization-based and deep …

Geodesic exponential kernels: When curvature and linearity conflict

A Feragen, F Lauze, S Hauberg - Proceedings of the IEEE …, 2015 - cv-foundation.org
We consider kernel methods on general geodesic metric spaces and provide both negative
and positive results. First we show that the common Gaussian kernel can only be …

Deformetrica 4: an open-source software for statistical shape analysis

A Bône, M Louis, B Martin, S Durrleman - Shape in Medical Imaging …, 2018 - Springer
Deformetrica is an open-source software for the statistical analysis of images and meshes. It
relies on a specific instance of the large deformation diffeomorphic metric mapping …

Elastic shape analysis of surfaces with second-order sobolev metrics: a comprehensive numerical framework

E Hartman, Y Sukurdeep, E Klassen, N Charon… - International Journal of …, 2023 - Springer
This paper introduces a set of numerical methods for Riemannian shape analysis of 3D
surfaces within the setting of invariant (elastic) second-order Sobolev metrics. More …

Optimal transport for diffeomorphic registration

J Feydy, B Charlier, FX Vialard, G Peyré - … 11-13, 2017, Proceedings, Part I …, 2017 - Springer
This paper introduces the use of unbalanced optimal transport methods as a similarity
measure for diffeomorphic matching of imaging data. The similarity measure is a key object …

Amotl1 mediates sequestration of the Hippo effector Yap1 downstream of Fat4 to restrict heart growth

CV Ragni, N Diguet, JF Le Garrec, M Novotova… - Nature …, 2017 - nature.com
Although in flies the atypical cadherin Fat is an upstream regulator of Hippo signalling, the
closest mammalian homologue, Fat4, has been shown to regulate tissue polarity rather than …

ResNet-LDDMM: advancing the LDDMM framework using deep residual networks

BB Amor, S Arguillère, L Shao - IEEE Transactions on Pattern …, 2022 - ieeexplore.ieee.org
In deformable registration, the Riemannian framework–Large Deformation Diffeomorphic
Metric Mapping, or LDDMM for short–has inspired numerous techniques for comparing …