Single cell dynamics of tumor specificity vs bystander activity in CD8+ T cells define the diverse immune landscapes in colorectal cancer

DM Borràs, S Verbandt, M Ausserhofer, G Sturm, J Lim… - Cell Discovery, 2023 - nature.com
CD8+ T cell activation via immune checkpoint blockade (ICB) is successful in microsatellite
instable (MSI) colorectal cancer (CRC) patients. By comparison, the success of …

Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system

I Adameyko, T Bakken, A Bhaduri, C Chhatbar… - Nature …, 2024 - nature.com
Single-cell and single-nucleus genomic approaches can provide unbiased and multimodal
insights. Here, we discuss what constitutes a molecular cell atlas and how to leverage single …

A dynamical perspective: moving towards mechanism in single-cell transcriptomics

RJ Maizels - … Transactions of the Royal Society B, 2024 - royalsocietypublishing.org
As the field of single-cell transcriptomics matures, research is shifting focus from
phenomenological descriptions of cellular phenotypes to a mechanistic understanding of the …

Aging Fly Cell Atlas identifies exhaustive aging features at cellular resolution

TC Lu, M Brbić, YJ Park, T Jackson, J Chen, SS Kolluru… - Science, 2023 - science.org
Aging is characterized by a decline in tissue function, but the underlying changes at cellular
resolution across the organism remain unclear. Here, we present the Aging Fly Cell Atlas, a …

[HTML][HTML] A spatial human thymus cell atlas mapped to a continuous tissue axis

N Yayon, VR Kedlian, L Boehme, C Suo, BT Wachter… - Nature, 2024 - nature.com
T cells develop from circulating precursor cells, which enter the thymus and migrate through
specialized subcompartments that support their maturation and selection. In humans, this …

[HTML][HTML] A multi-omic atlas of human embryonic skeletal development

K To, L Fei, JP Pett, K Roberts, R Blain, K Polański, T Li… - Nature, 2024 - nature.com
Human embryonic bone and joint formation is determined by coordinated differentiation of
progenitors in the nascent skeleton. The cell states, epigenetic processes and key regulatory …

An organotypic atlas of human vascular cells

SN Barnett, AM Cujba, L Yang, AR Maceiras, S Li… - Nature Medicine, 2024 - nature.com
The human vascular system, comprising endothelial (EC) and mural cells, covers a vast
surface area in the body, providing a critical interface between blood and tissue …

Deep learning-based models for preimplantation mouse and human embryos based on single-cell RNA sequencing

M Proks, N Salehin, JM Brickman - Nature Methods, 2024 - nature.com
The rapid growth of single-cell transcriptomic technology has produced an increasing
number of datasets for both embryonic development and in vitro pluripotent stem cell …

IGFBPL1 is a master driver of microglia homeostasis and resolution of neuroinflammation in glaucoma and brain tauopathy

L Pan, KS Cho, X Wei, F Xu, A Lennikov, G Hu, J Tang… - Cell reports, 2023 - cell.com
Microglia shift toward an inflammatory phenotype during aging that is thought to exacerbate
age-related neurodegeneration. The molecular and cellular signals that resolve …

[HTML][HTML] PGF2α signaling drives fibrotic remodeling and fibroblast population dynamics in mice

LR Rodriguez, SY Tang, WR Barboza, A Murthy… - JCI insight, 2023 - ncbi.nlm.nih.gov
Idiopathic pulmonary fibrosis (IPF) is a chronic parenchymal lung disease characterized by
repetitive alveolar cell injury, myofibroblast proliferation, and excessive extracellular matrix …