Inferring microRNA regulation: A proteome perspective

D Ofer, M Linial - Frontiers in Molecular Biosciences, 2022 - frontiersin.org
Post-transcriptional regulation in multicellular organisms is mediated by microRNAs.
However, the principles that determine if a gene is regulated by miRNAs are poorly …

Kinetic modelling of competition and depletion of shared miRNAs by competing endogenous RNAs

A Martirosyan, M Del Giudice, CE Bena… - … Biology of Non-Coding …, 2019 - Springer
Non-coding RNAs play a key role in the post-transcriptional regulation of mRNA translation
and turnover in eukaryotes. miRNAs, in particular, interact with their target RNAs through …

Insights into the miRNA regulations in human disease genes

J Das, S Podder, TC Ghosh - BMC genomics, 2014 - Springer
Background MicroRNAs are a class of short non-coding RNAs derived from either cellular or
viral transcripts that act post-transcriptionally to regulate mRNA stability and translation. In …

ceRNA crosstalk stabilizes protein expression and affects the correlation pattern of interacting proteins

A Martirosyan, A De Martino, A Pagnani, E Marinari - Scientific reports, 2017 - nature.com
Gene expression is a noisy process and several mechanisms, both transcriptional and post-
transcriptional, can stabilize protein levels in cells. Much work has focused on the role of …

[HTML][HTML] Exploring the evolutionary rate differences between human disease and non-disease genes

S Chakraborty, A Panda, TC Ghosh - Genomics, 2016 - Elsevier
Comparisons of evolutionary features between human disease and non-disease genes
have a wide implication to understand the genetic basis of human disease genes. However …

Evolutionary rate heterogeneity of core and attachment proteins in yeast protein complexes

S Chakraborty, TC Ghosh - Genome biology and evolution, 2013 - academic.oup.com
In general, proteins do not work alone; they form macromolecular complexes to play
fundamental roles in diverse cellular functions. On the basis of their iterative clustering …

Elucidating the genotype–phenotype relationships and network perturbations of human shared and specific disease genes from an evolutionary perspective

T Begum, TC Ghosh - Genome Biology and Evolution, 2014 - academic.oup.com
To date, numerous studies have been attempted to determine the extent of variation in
evolutionary rates between human disease and nondisease (ND) genes. In our present …

GECluster: a novel protein complex prediction method

L Su, G Liu, H Wang, Y Tian, Z Zhou… - Biotechnology & …, 2014 - Taylor & Francis
Identification of protein complexes is of great importance in the understanding of cellular
organization and functions. Traditional computational protein complex prediction methods …

[PDF][PDF] ARTICLE; BIOINFORMATICS

L Su, G Liu, H Wang, Y Tian, Z Zhou, L Han, L Yan - 2014 - Citeseer
Identification of protein complexes is of great importance in the understanding of cellular
organization and functions. Traditional computational protein complex prediction methods …