Cryptic species as a window into the paradigm shift of the species concept

C Fišer, CT Robinson, F Malard - Molecular Ecology, 2018 - Wiley Online Library
The species concept is the cornerstone of biodiversity science, and any paradigm shift in the
delimitation of species affects many research fields. Many biologists now are embracing a …

Integrating animal temperament within ecology and evolution

D Réale, SM Reader, D Sol, PT McDougall… - Biological …, 2007 - Wiley Online Library
Temperament describes the idea that individual behavioural differences are repeatable over
time and across situations. This common phenomenon covers numerous traits, such as …

RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language

S Höhna, MJ Landis, TA Heath, B Boussau… - Systematic …, 2016 - academic.oup.com
Programs for Bayesian inference of phylogeny currently implement a unique and fixed suite
of models. Consequently, users of these software packages are simultaneously forced to …

A linear-time algorithm for Gaussian and non-Gaussian trait evolution models

L Tung Ho, C Ané - Systematic biology, 2014 - academic.oup.com
We developed a linear-time algorithm applicable to a large class of trait evolution models,
for efficient likelihood calculations and parameter inference on very large trees. Our …

Detecting hidden diversification shifts in models of trait-dependent speciation and extinction

JM Beaulieu, BC O'Meara - Systematic biology, 2016 - academic.oup.com
The distribution of diversity can vary considerably from clade to clade. Attempts to
understand these patterns often employ state-dependent speciation and extinction models …

mvmorph: an r package for fitting multivariate evolutionary models to morphometric data

J Clavel, G Escarguel… - Methods in Ecology and …, 2015 - Wiley Online Library
We present mvmorph, a package of multivariate phylogenetic comparative methods for the r
statistical environment. mvmorph is freely available on the cran package repository …

[图书][B] Modern phylogenetic comparative methods and their application in evolutionary biology: concepts and practice

LZ Garamszegi - 2014 - Springer
Many evolutionary biologists are concerned with the tremendous amount of diversity of
species, and their phenotypes, that we can currently observe in nature, and one of the most …

Rethinking phylogenetic comparative methods

JC Uyeda, R Zenil-Ferguson, MW Pennell - Systematic Biology, 2018 - academic.oup.com
As a result of the process of descent with modification, closely related species tend to be
similar to one another in a myriad different ways. In statistical terms, this means that traits …

Rates of dinosaur body mass evolution indicate 170 million years of sustained ecological innovation on the avian stem lineage

RBJ Benson, NE Campione, MT Carrano… - PLoS …, 2014 - journals.plos.org
Large-scale adaptive radiations might explain the runaway success of a minority of extant
vertebrate clades. This hypothesis predicts, among other things, rapid rates of morphological …

A primer on phylogenetic generalised least squares

MRE Symonds, SP Blomberg - Modern phylogenetic comparative methods …, 2014 - Springer
Phylogenetic generalised least squares (PGLS) is one of the most commonly employed
phylogenetic comparative methods. The technique, a modification of generalised least …