Nitrification and beyond: metabolic versatility of ammonia oxidising archaea

CL Wright, LE Lehtovirta-Morley - The ISME Journal, 2023 - academic.oup.com
Ammonia oxidising archaea are among the most abundant living organisms on Earth and
key microbial players in the global nitrogen cycle. They carry out oxidation of ammonia to …

Biological nitrification inhibition in the rhizosphere: determining interactions and impact on microbially mediated processes and potential applications

P Nardi, HJ Laanbroek, GW Nicol… - FEMS Microbiology …, 2020 - academic.oup.com
Nitrification is the microbial conversion of reduced forms of nitrogen (N) to nitrate (NO3−),
and in fertilized soils it can lead to substantial N losses via NO3− leaching or nitrous oxide …

Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities

MY Jung, CJ Sedlacek, KD Kits, AJ Mueller… - The ISME …, 2022 - academic.oup.com
Nitrification, the oxidation of ammonia to nitrate, is an essential process in the
biogeochemical nitrogen cycle. The first step of nitrification, ammonia oxidation, is performed …

Ammonia-oxidizing bacteria and archaea exhibit differential nitrogen source preferences

W Qin, SP Wei, Y Zheng, E Choi, X Li, J Johnston… - Nature …, 2024 - nature.com
Ammonia-oxidizing microorganisms (AOM) contribute to one of the largest nitrogen fluxes in
the global nitrogen budget. Four distinct lineages of AOM: ammonia-oxidizing archaea …

Surface components and metabolites of probiotics for regulation of intestinal epithelial barrier

Q Liu, Z Yu, F Tian, J Zhao, H Zhang, Q Zhai… - Microbial Cell …, 2020 - Springer
The gut microbiota can significantly affect the function of the intestinal barrier. Some
intestinal probiotics (such as Lactobacillus, Bifidobacteria, a few Escherichia coli strains, and …

Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea

W Qin, Y Zheng, F Zhao, Y Wang, H Urakawa… - The ISME …, 2020 - academic.oup.com
Ammonia-oxidizing archaea (AOA) are among the most abundant and ubiquitous
microorganisms in the ocean, exerting primary control on nitrification and nitrogen oxides …

Microbial strategies driving low concentration substrate degradation for sustainable remediation solutions

Q Yin, K He, G Collins, J De Vrieze, G Wu - npj Clean Water, 2024 - nature.com
Microbial metabolism upholds a fundamental role in the sustainability of water ecosystems.
However, how microorganisms surviving in low-concentration substrate water environments …

Molecular logic of prokaryotic surface layer structures

TAM Bharat, A von Kügelgen, V Alva - Trends in microbiology, 2021 - cell.com
Most prokaryotic cells are encased in a surface layer (S-layer) consisting of a paracrystalline
array of repeating lattice-forming proteins. S-layer proteins populate a vast and diverse …

Affinity informs environmental cooperation between ammonia-oxidizing archaea (AOA) and anaerobic ammonia-oxidizing (Anammox) bacteria

LL Straka, KA Meinhardt, A Bollmann, DA Stahl… - The ISME …, 2019 - academic.oup.com
Anaerobic ammonia-oxidizing (Anammox) bacteria (AnAOB) rely on nitrite supplied by
ammonia-oxidizing bacteria (AOB) and archaea (AOA). Affinities for ammonia and oxygen …

Unexpected complexity of the ammonia monooxygenase in archaea

LH Hodgskiss, M Melcher, M Kerou, W Chen… - The ISME …, 2023 - academic.oup.com
Ammonia oxidation, as the first step of nitrification, constitutes a critical process in the global
nitrogen cycle. However, fundamental knowledge of its key enzyme, the copper-dependent …