RNA sequencing: the teenage years

R Stark, M Grzelak, J Hadfield - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for
transcriptome-wide analysis of differential gene expression and differential splicing of …

Biomimetic nanotechnology toward personalized vaccines

J Zhou, AV Kroll, M Holay, RH Fang… - Advanced …, 2020 - Wiley Online Library
While traditional approaches for disease management in the era of modern medicine have
saved countless lives and enhanced patient well‐being, it is clear that there is significant …

[HTML][HTML] Distinct cellular mechanisms underlie anti-CTLA-4 and anti-PD-1 checkpoint blockade

SC Wei, JH Levine, AP Cogdill, Y Zhao, NAAS Anang… - Cell, 2017 - cell.com
Immune-checkpoint blockade is able to achieve durable responses in a subset of patients;
however, we lack a satisfying comprehension of the underlying mechanisms of anti-CTLA-4 …

Extricating human tumour immune alterations from tissue inflammation

F Mair, JR Erickson, M Frutoso, AJ Konecny, E Greene… - Nature, 2022 - nature.com
Immunotherapies have achieved remarkable successes in the treatment of cancer, but major
challenges remain,. An inherent weakness of current treatment approaches is that …

A covalent inhibitor of K-Ras (G12C) induces MHC class I presentation of haptenated peptide neoepitopes targetable by immunotherapy

Z Zhang, PJ Rohweder, C Ongpipattanakul, K Basu… - Cancer Cell, 2022 - cell.com
Immunotargeting of tumor-specific antigens is a powerful therapeutic strategy.
Immunotherapies directed at MHC-I complexes have expanded the scope of antigens and …

CyTOF® for the Masses

A Iyer, AAJ Hamers, AB Pillai - Frontiers in immunology, 2022 - frontiersin.org
Mass cytometry has revolutionized immunophenotyping, particularly in exploratory settings
where simultaneous breadth and depth of characterization of immune populations is needed …

[HTML][HTML] Mitochondrial dysregulation and glycolytic insufficiency functionally impair CD8 T cells infiltrating human renal cell carcinoma

PJ Siska, KE Beckermann, FM Mason, G Andrejeva… - JCI insight, 2017 - ncbi.nlm.nih.gov
Cancer cells can inhibit effector T cells (Teff) through both immunomodulatory receptors and
the impact of cancer metabolism on the tumor microenvironment. Indeed, Teff require high …

Metal-isotope-tagged monoclonal antibodies for high-dimensional mass cytometry

G Han, MH Spitzer, SC Bendall, WJ Fantl, GP Nolan - Nature protocols, 2018 - nature.com
Advances in single-cell mass cytometry have increasingly improved highly multidimensional
characterization of immune cell heterogeneity. The immunoassay multiplexing capacity …

[HTML][HTML] Unsupervised trajectory analysis of single-cell RNA-seq and imaging data reveals alternative tuft cell origins in the gut

CA Herring, A Banerjee, ET McKinley, AJ Simmons… - Cell systems, 2018 - cell.com
Modern single-cell technologies allow multiplexed sampling of cellular states within a tissue.
However, computational tools that can infer developmental cell-state transitions reproducibly …

3D models in the new era of immune oncology: focus on T cells, CAF and ECM

F Di Modugno, C Colosi, P Trono, G Antonacci… - Journal of Experimental …, 2019 - Springer
Immune checkpoint inhibitor therapy has changed clinical practice for patients with different
cancers, since these agents have demonstrated a significant improvement of overall survival …