SimpleElastix: A user-friendly, multi-lingual library for medical image registration

K Marstal, F Berendsen, M Staring… - Proceedings of the IEEE …, 2016 - cv-foundation.org
In this paper we present SimpleElastix, an extension of SimpleITK designed to bring the
Elastix medical image registration library to a wider audience. Elastix is a modular collection …

Upscaling the elastic stiffness of foam concrete as a three-phase composite material

MB Youssef, F Lavergne, K Sab, K Miled… - Cement and Concrete …, 2018 - Elsevier
The stiffness of foam concrete depends primarily on the added porosity. Nevertheless, by
performing 3D elastic numerical simulations on artificial unit cells in the frame of periodic …

[PDF][PDF] QUIT: QUantitative imaging tools

TC Wood - Journal of Open Source Software, 2018 - theoj.org
Magnetic Resonance Imaging (MRI) is evolving from acquiring simple qualitative images
towards quantitative data, where information can be inferred about tissue microstructure …

Virtual high‐count PET image generation using a deep learning method

J Liu, S Ren, R Wang, N Mirian, YJ Tsai… - Medical …, 2022 - Wiley Online Library
Purpose Recently, deep learning‐based methods have been established to denoise the low‐
count positron emission tomography (PET) images and predict their standard‐count image …

Highly accurate facial nerve segmentation refinement from CBCT/CT imaging using a super-resolution classification approach

P Lu, L Barazzetti, V Chandran… - IEEE transactions on …, 2017 - ieeexplore.ieee.org
Facial nerve segmentation is of considerable importance for preoperative planning of
cochlear implantation. However, it is strongly influenced by the relatively low resolution of …

Interactive mining of neural pathways to preoperative neurosurgical planning

ST Wu, R Voltoline, RL Benites, BM de Campos… - Computers in Biology …, 2025 - Elsevier
Background and objective: Preoperative understanding of white matter anatomy, including
its spatial relationship with pathology and superficial landmarks, is vital for effective surgical …

A Parallel Nonrigid Registration Algorithm Based on B‐Spline for Medical Images

X Du, J Dang, Y Wang, S Wang… - … mathematical methods in …, 2016 - Wiley Online Library
The nonrigid registration algorithm based on B‐spline Free‐Form Deformation (FFD) plays a
key role and is widely applied in medical image processing due to the good flexibility and …

[PDF][PDF] Workflows and components of bioimage analysis

K Miura, P Paul-Gilloteaux, S Tosi… - Bioimage Data Analysis …, 2020 - library.oapen.org
Software tools used for bioimage analysis tend to be seen as utilities that solve problems off-
the-shelf. The extreme version of such is like:“If I know where to click, I can get good results!” …

Estimation of the number of alveolar capillaries by the Euler number (Euler-Poincaré characteristic)

A Willführ, C Brandenberger… - … of Physiology-Lung …, 2015 - journals.physiology.org
The lung parenchyma provides a maximal surface area of blood-containing capillaries that
are in close contact with a large surface area of the air-containing alveoli. Volume and …

Pigsnipe: Scalable neuroimaging processing engine for minipig mri

M Brzus, K Knoernschild, JC Sieren, HJ Johnson - Algorithms, 2023 - mdpi.com
Translation of basic animal research to find effective methods of diagnosing and treating
human neurological disorders requires parallel analysis infrastructures. Small animals such …