A current view on long noncoding RNAs in yeast and filamentous fungi

P Till, RL Mach, AR Mach-Aigner - Applied microbiology and …, 2018 - Springer
Long noncoding RNAs (lncRNAs) are crucial players in epigenetic regulation. They were
initially discovered in human, yet they emerged as common factors involved in a number of …

Roles of lncRNA transcription as a novel regulator of chromosomal function

S Senmatsu, K Hirota - Genes & genetic systems, 2020 - jstage.jst.go.jp
In recent years, many transcriptome analyses have revealed that numerous noncoding
RNAs are transcribed in eukaryotic cells. Long noncoding RNAs (lncRNAs), which consist of …

Nitrogen signaling factor triggers a respiration-like gene expression program in fission yeast

S Ohsawa, M Schwaiger, V Iesmantavicius… - The EMBO …, 2024 - embopress.org
Microbes have evolved intricate communication systems that enable individual cells of a
population to send and receive signals in response to changes in their immediate …

Facultative heterochromatin formation in rDNA is essential for cell survival during nutritional starvation

H Hirai, N Takemata, M Tamura… - Nucleic Acids Research, 2022 - academic.oup.com
During the cellular adaptation to nutrient starvation, cells temporarily decelerate translation
processes including ribosomal biogenesis. However, the mechanisms repressing robust …

Comparative Research: Regulatory Mechanisms of Ribosomal Gene Transcription in Saccharomyces cerevisiae and Schizosaccharomyces pombe

H Hirai, K Ohta - Biomolecules, 2023 - mdpi.com
Restricting ribosome biosynthesis and assembly in response to nutrient starvation is a
universal phenomenon that enables cells to survive with limited intracellular resources …

Emerging properties and functional consequences of noncoding transcription

R Ard, RC Allshire, S Marquardt - Genetics, 2017 - academic.oup.com
Eukaryotic genomes are rich in transcription units encoding “long noncoding
RNAs”(lncRNAs). The purpose of all this transcription is unclear since most lncRNAs are …

Transposon Removal Reveals Their Adaptive Fitness Contribution

S Cranz-Mileva, E Reilly, N Chalhoub… - Genome biology and …, 2024 - academic.oup.com
Transposable elements are molecular parasites that persist in their host genome by
generating new copies to outpace natural selection. Transposable elements exert a large …

Multi-Layered Regulations on the Chromatin Architectures: Establishing the Tight and Specific Responses of Fission Yeast fbp1 Gene Transcription

R Asada, K Hirota - Biomolecules, 2022 - mdpi.com
Transcriptional regulation is pivotal for all living organisms and is required for adequate
response to environmental fluctuations and intercellular signaling molecules. For precise …

Deciphering shared attributes of plant long non-coding RNAs through a comparative computational approach

VK Yadav, SK Jalmi, S Tiwari, S Kerkar - Scientific Reports, 2023 - nature.com
Over the past decade, long non-coding RNA (lncRNA), which lacks protein-coding potential,
has emerged as an essential regulator of the genome. The present study examined 13,599 …

Role of non-coding RNA transcription around gene regulatory elements in transcription factor recruitment

N Takemata, K Ohta - RNA biology, 2017 - Taylor & Francis
Eukaryotic cells produce a variety of non-coding RNAs (ncRNAs), many of which have been
shown to play pivotal roles in biological processes such as differentiation, maintenance of …