Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle

A Cánovas, A Reverter, KL DeAtley, RL Ashley… - PloS one, 2014 - journals.plos.org
Puberty is a complex physiological event by which animals mature into an adult capable of
sexual reproduction. In order to enhance our understanding of the genes and regulatory …

Integrative genomics identifies APOE ε4 effectors in Alzheimer's disease

H Rhinn, R Fujita, L Qiang, R Cheng, JH Lee… - Nature, 2013 - nature.com
Late-onset Alzheimer's disease (LOAD) risk is strongly influenced by genetic factors such as
the presence of the apolipoprotein E ε4 allele (referred to here as APOE4), as well as non …

Predicting hub genes associated with cervical cancer through gene co-expression networks

SP Deng, L Zhu, DS Huang - IEEE/ACM Transactions on …, 2015 - ieeexplore.ieee.org
Cervical cancer is the third most common malignancy in women worldwide. It remains a
leading cause of cancer-related death for women in developing countries. In order to …

Integrating gene expression and protein-protein interaction network to prioritize cancer-associated genes

C Wu, J Zhu, X Zhang - BMC bioinformatics, 2012 - Springer
Background To understand the roles they play in complex diseases, genes need to be
investigated in the networks they are involved in. Integration of gene expression and …

Alternative α-synuclein transcript usage as a convergent mechanism in Parkinson's disease pathology

H Rhinn, L Qiang, T Yamashita, D Rhee, A Zolin… - Nature …, 2012 - nature.com
Abstract α-Synuclein is implicated both in physiological functions at neuronal synaptic
terminals as well as in pathological processes in the context of Parkinson's disease …

Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer

DD Bhuva, J Cursons, GK Smyth, MJ Davis - Genome biology, 2019 - Springer
Background Elucidation of regulatory networks, including identification of regulatory
mechanisms specific to a given biological context, is a key aim in systems biology. This has …

Comparative analysis of muscle transcriptome between pig genotypes identifies genes and regulatory mechanisms associated to growth, fatness and metabolism

M Ayuso, A Fernandez, Y Nunez, R Benitez, B Isabel… - PloS one, 2015 - journals.plos.org
Iberian ham production includes both purebred (IB) and Duroc-crossbred (IBxDU) Iberian
pigs, which show important differences in meat quality and production traits, such as muscle …

Cerebrum, liver, and muscle regulatory networks uncover maternal nutrition effects in developmental programming of beef cattle during early pregnancy

WJS Diniz, MS Crouse, RA Cushman, KJ McLean… - Scientific reports, 2021 - nature.com
The molecular basis underlying fetal programming in response to maternal nutrition remains
unclear. Herein, we investigated the regulatory relationships between genes in fetal …

Identification of gene networks for residual feed intake in Angus cattle using genomic prediction and RNA-seq

KL Weber, BT Welly, AL Van Eenennaam, AE Young… - PloS one, 2016 - journals.plos.org
Improvement in feed conversion efficiency can improve the sustainability of beef cattle
production, but genomic selection for feed efficiency affects many underlying molecular …

Mining the bladder cancer-associated genes by an integrated strategy for the construction and analysis of differential co-expression networks

SP Deng, L Zhu, DS Huang - BMC genomics, 2015 - Springer
Background Bladder cancer is the most common malignant tumor of the urinary system and
it is a heterogeneous disease with both superficial and invasive growth. However, its …