Principles and methods of integrative genomic analyses in cancer

VN Kristensen, OC Lingjærde, HG Russnes… - Nature Reviews …, 2014 - nature.com
Combined analyses of molecular data, such as DNA copy-number alteration, mRNA and
protein expression, point to biological functions and molecular pathways being deregulated …

Phosphoinositide signalling in cancer: beyond PI3K and PTEN

TD Bunney, M Katan - Nature Reviews Cancer, 2010 - nature.com
There are numerous studies that suggest multiple links between the cellular
phosphoinositide system and cancer. As key roles in cancer have been established for PI3K …

[HTML][HTML] The somatic mutation profiles of 2,433 breast cancers refine their genomic and transcriptomic landscapes

B Pereira, SF Chin, OM Rueda, HKM Vollan… - Nature …, 2016 - nature.com
The genomic landscape of breast cancer is complex, and inter-and intra-tumour
heterogeneity are important challenges in treating the disease. In this study, we sequence …

MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype

C Blenkiron, LD Goldstein, NP Thorne, I Spiteri… - Genome biology, 2007 - Springer
Background MicroRNAs (miRNAs), a class of short non-coding RNAs found in many plants
and animals, often act post-transcriptionally to inhibit gene expression. Results Here we …

Inferring tumor progression from genomic heterogeneity

N Navin, A Krasnitz, L Rodgers, K Cook, J Meth… - Genome …, 2010 - genome.cshlp.org
Cancer progression in humans is difficult to infer because we do not routinely sample
patients at multiple stages of their disease. However, heterogeneous breast tumors provide …

Evidence that inositol polyphosphate 4-phosphatase type II is a tumor suppressor that inhibits PI3K signaling

C Gewinner, ZC Wang, A Richardson… - Cancer cell, 2009 - cell.com
We report that knocking down the expression of inositol polyphosphate 4-phosphatase type
II (INPP4B) in human epithelial cells, like knockdown of PTEN, resulted in enhanced Akt …

Triple negative breast cancers: clinical and prognostic implications

SJ Dawson, E Provenzano, C Caldas - European journal of cancer, 2009 - Elsevier
Triple negative breast cancers are defined by the absence of oestrogen, progesterone and
HER2 expression. Most triple negative cancers display distinct clinical and pathological …

Insight into the heterogeneity of breast cancer through next-generation sequencing

HG Russnes, N Navin, J Hicks… - The Journal of …, 2011 - Am Soc Clin Investig
Rapid and sophisticated improvements in molecular analysis have allowed us to sequence
whole human genomes as well as cancer genomes, and the findings suggest that we may …

High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer

SF Chin, AE Teschendorff, JC Marioni, Y Wang… - Genome biology, 2007 - Springer
Background The characterization of copy number alteration patterns in breast cancer
requires high-resolution genome-wide profiling of a large panel of tumor specimens. To …

[HTML][HTML] Triple-negative breast cancer and the need for new therapeutic targets

O Engebraaten, HKM Vollan… - The American journal of …, 2013 - Elsevier
Triple-negative breast cancers (TNBCs) are a diverse and heterogeneous group of tumors
that by definition lack estrogen and progesterone receptors and amplification of the HER2 …