Conceptual and empirical bridges between micro-and macroevolution

J Rolland, LF Henao-Diaz, M Doebeli… - Nature Ecology & …, 2023 - nature.com
Explaining broad molecular, phenotypic and species biodiversity patterns necessitates a
unifying framework spanning multiple evolutionary scales. Here we argue that although …

Seven shortfalls that beset large-scale knowledge of biodiversity

J Hortal, F de Bello, JAF Diniz-Filho… - Annual review of …, 2015 - annualreviews.org
Ecologists and evolutionary biologists are increasingly using big-data approaches to tackle
questions at large spatial, taxonomic, and temporal scales. However, despite recent efforts …

Defining heritability, plasticity, and transition dynamics of cellular phenotypes in somatic evolution

JS Schiffman, AR D'Avino, T Prieto, Y Pang, Y Fan… - Nature Genetics, 2024 - nature.com
Single-cell sequencing has characterized cell state heterogeneity across diverse healthy
and malignant tissues. However, the plasticity or heritability of these cell states remains …

mvmorph: an r package for fitting multivariate evolutionary models to morphometric data

J Clavel, G Escarguel… - Methods in Ecology and …, 2015 - Wiley Online Library
We present mvmorph, a package of multivariate phylogenetic comparative methods for the r
statistical environment. mvmorph is freely available on the cran package repository …

Rethinking phylogenetic comparative methods

JC Uyeda, R Zenil-Ferguson, MW Pennell - Systematic Biology, 2018 - academic.oup.com
As a result of the process of descent with modification, closely related species tend to be
similar to one another in a myriad different ways. In statistical terms, this means that traits …

Testing for phylogenetic signal in comparative data: behavioral traits are more labile

SP Blomberg, T Garland Jr, AR Ives - Evolution, 2003 - Wiley Online Library
The primary rationale for the use of phylogenetically based statistical methods is that
phylogenetic signal, the tendency for related species to resemble each other, is ubiquitous …

Modeling stabilizing selection: expanding the Ornstein–Uhlenbeck model of adaptive evolution

JM Beaulieu, DC Jhwueng, C Boettiger, BC O'Meara - Evolution, 2012 - academic.oup.com
Comparative methods used to study patterns of evolutionary change in a continuous trait on
a phylogeny range from Brownian motion processes to models where the trait is assumed to …

Early bursts of body size and shape evolution are rare in comparative data

LJ Harmon, JB Losos, T Jonathan Davies… - …, 2010 - academic.oup.com
Abstract George Gaylord Simpson famously postulated that much of life's diversity originated
as adaptive radiations—more or less simultaneous divergences of numerous lines from a …

Stabilizing selection and the comparative analysis of adaptation

TF Hansen - Evolution, 1997 - Wiley Online Library
Comparative studies tend to differ from optimality and functionality studies in how they treat
adaptation. While the comparative approach focuses on the origin and change of traits …

General quantitative genetic methods for comparative biology: phylogenies, taxonomies and multi‐trait models for continuous and categorical characters

JD Hadfield, S Nakagawa - Journal of evolutionary biology, 2010 - academic.oup.com
Although many of the statistical techniques used in comparative biology were originally
developed in quantitative genetics, subsequent development of comparative techniques has …