Review of clinical next-generation sequencing

S Yohe, B Thyagarajan - Archives of pathology & …, 2017 - meridian.allenpress.com
Context.—Next-generation sequencing (NGS) is a technology being used by many
laboratories to test for inherited disorders and tumor mutations. This technology is new for …

Clinical cancer genomic profiling

D Chakravarty, DB Solit - Nature Reviews Genetics, 2021 - nature.com
Technological innovation and rapid reduction in sequencing costs have enabled the
genomic profiling of hundreds of cancer-associated genes as a component of routine cancer …

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer

M Griffith, NC Spies, K Krysiak, JF McMichael… - Nature …, 2017 - nature.com
CIViC is an expert-crowdsourced knowledgebase for Clinical Interpretation of Variants in
Cancer describing the therapeutic, prognostic, diagnostic and predisposing relevance of …

Utility of ctDNA to support patient selection for early phase clinical trials: the TARGET study

DG Rothwell, M Ayub, N Cook, F Thistlethwaite… - Nature medicine, 2019 - nature.com
Next-generation sequencing (NGS) of circulating tumor DNA (ctDNA) supports blood-based
genomic profiling but is not yet routinely implemented in the setting of a phase I trials clinic …

[HTML][HTML] Clinical validation of the tempus xT next-generation targeted oncology sequencing assay

N Beaubier, R Tell, D Lau, JR Parsons, S Bush… - Oncotarget, 2019 - ncbi.nlm.nih.gov
We developed and clinically validated a hybrid capture next generation sequencing assay to
detect somatic alterations and microsatellite instability in solid tumors and hematologic …

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

AH Wagner, B Walsh, G Mayfield, D Tamborero… - Nature …, 2020 - nature.com
Precision oncology relies on accurate discovery and interpretation of genomic variants,
enabling individualized diagnosis, prognosis and therapy selection. We found that six …

The evidence framework for precision cancer medicine

JA Moscow, T Fojo, RL Schilsky - Nature reviews Clinical oncology, 2018 - nature.com
Precision cancer medicine (PCM) is a concept in which oncologists increasingly strive to
tailor the use of targeted therapies in order to match the complexity of the cancer genome …

Clinical practice guidance for next-generation sequencing in cancer diagnosis and treatment (edition 2.1)

Y Naito, H Aburatani, T Amano, E Baba… - International Journal of …, 2021 - Springer
Background To promote precision oncology in clinical practice, the Japanese Society of
Medical Oncology, the Japanese Society of Clinical Oncology, and the Japanese Cancer …

Variant classification in precision oncology

J Leichsenring, P Horak, S Kreutzfeldt… - … Journal of Cancer, 2019 - Wiley Online Library
Next‐generation sequencing has become a cornerstone of therapy guidance in cancer
precision medicine and an indispensable research tool in translational oncology. Its rapidly …

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase

K Krysiak, AM Danos, J Saliba… - Nucleic acids …, 2023 - academic.oup.com
Abstract CIViC (Clinical Interpretation of Variants in Cancer; civicdb. org) is a crowd-sourced,
public domain knowledgebase composed of literature-derived evidence characterizing the …