Similarity-based virtual screen using enhanced Siamese deep learning methods

MK Altalib, N Salim - ACS omega, 2022 - ACS Publications
Traditional drug production is a long and complex process that leads to new drug
production. The virtual screening technique is a computational method that allows chemical …

Predicting missing values with biclustering: A coherence-based approach

FO de França, GP Coelho, FJ Von Zuben - Pattern Recognition, 2013 - Elsevier
In this work, a novel biclustering-based approach to data imputation is proposed. This
approach is based on the Mean Squared Residue metric, used to evaluate the degree of …

A hash-based co-clustering algorithm for categorical data

FO de França - Expert Systems with Applications, 2016 - Elsevier
Cluster analysis, or clustering, refers to the analysis of the structural organization of a data
set. This analysis is performed by grouping together objects of the data that are more similar …

Ligand expansion in ligand-based virtual screening using relevance feedback

A Abdo, F Saeed, H Hamza, A Ahmed… - Journal of computer-aided …, 2012 - Springer
Query expansion is the process of reformulating an original query to improve retrieval
performance in information retrieval systems. Relevance feedback is one of the most useful …

Conceptual and practical aspects of the aiNet family of algorithms

FO de França, GP Coelho, PAD Castro… - Nature-Inspired …, 2012 - igi-global.com
In this paper, a review of the conceptual and practical aspects of the aiNet (Artificial Immune
Network) family of algorithms will be provided. This family of algorithms started with the aiNet …

TMG-BoBI: generating back-of-the-book indexes with the text-to-matrix-generator

T Koutropoulou, E Gallopoulos - 2019 10th International …, 2019 - ieeexplore.ieee.org
A common editorial task when preparing scientific monographs, books, even long articles
such as surveys, is to prepare a Back-of-the-Book index (BoBI). In this paper we study the …

Biclustering and coclustering: concepts, algorithms and viability for text mining

AKR Diaz, SM Peres - Revista de Informática Teórica e Aplicada, 2019 - seer.ufrgs.br
Biclustering and coclustering are data mining tasks capable of extracting relevant
information from data by applying similarity criteria simultaneously to rows and columns of …

Hybrid artificial immune strategy in identification and optimization of mechanical systems

A Poteralski - Journal of computational science, 2017 - Elsevier
The paper deals with an application of the two types of hybrid artificial immune system
(HAIS). First hybridization is based on hyper mutation gradient second is based on kriging …

Assessing the performance of a swarm-based biclustering technique for data imputation

R Veroneze, FO de França… - 2011 IEEE congress of …, 2011 - ieeexplore.ieee.org
Although the missing data problem has been studied for many years, it is still a relevant and
challenging problem nowadays. Data can be missing for a variety of reasons, and there are …

Fragment reweighting in ligand-based virtual screening

A Ahmed, N Salim, A Abdo - Advanced Science Letters, 2013 - ingentaconnect.com
Many methods have developed to capture the biological similarity between two compounds
for use in drug discovery. A variety of similarity metrics have introduced, Tanimoto coefficient …