Mechanisms underlying structural variant formation in genomic disorders

CMB Carvalho, JR Lupski - Nature Reviews Genetics, 2016 - nature.com
With the recent burst of technological developments in genomics, and the clinical
implementation of genome-wide assays, our understanding of the molecular basis of …

H. pylori infection alters repair of DNA double-strand breaks via SNHG17

T Han, X Jing, J Bao, L Zhao, A Zhang… - The Journal of …, 2020 - Am Soc Clin Investig
Chronic infections can lead to carcinogenesis through inflammation-related mechanisms.
Chronic infection of the human gastric mucosa with Helicobacter pylori is a well-known risk …

Genotype-Phenotype Correlations in Neurofibromatosis Type 1: Identification of Novel and Recurrent NF1 Gene Variants and Correlations with Neurocognitive …

F Napolitano, M Dell'Aquila, C Terracciano… - Genes, 2022 - mdpi.com
Neurofibromatosis type 1 (NF1) is one of the most common genetic tumor predisposition
syndrome, caused by mutations in the NF1. To date, few genotype-phenotype correlations …

Replication stress at microsatellites causes DNA double-strand breaks and break-induced replication

RY Gadgil, EJ Romer, CC Goodman, SD Rider… - Journal of Biological …, 2020 - ASBMB
Short tandemly repeated DNA sequences, termed microsatellites, are abundant in the
human genome. These microsatellites exhibit length instability and susceptibility to DNA …

Investigation of the mechanism of copy number variations involving the α-globin gene cluster on chromosome 16: Two case reports and literature review

D Zhu, L Xu, Y Zhang, G Liang, X Wei, L Li… - Molecular Genetics and …, 2023 - Springer
Thalassemia is one of the most common single-gene disorder worldwide. An important
genetic cause of thalassemia is copy number variations (CNVs) in the α-globin gene cluster …

SvAnna: efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing

D Danis, JOB Jacobsen, P Balachandran, Q Zhu… - Genome medicine, 2022 - Springer
Structural variants (SVs) are implicated in the etiology of Mendelian diseases but have been
systematically underascertained owing to sequencing technology limitations. Long-read …

Xq22 deletions and correlation with distinct neurological disease traits in females: further evidence for a contiguous gene syndrome

H Hijazi, FS Coelho, C Gonzaga‐Jauregui… - Human …, 2020 - Wiley Online Library
Xq22 deletions that encompass PLP1 (Xq22‐PLP1‐DEL) are notable for variable
expressivity of neurological disease traits in females ranging from a mild late‐onset form of …

Deletion of exon 4 in LAMA2 is the most frequent mutation in Chinese patients with laminin α2-related muscular dystrophy

L Ge, A Liu, K Gao, R Du, J Ding, B Mao, Y Hua… - Scientific Reports, 2018 - nature.com
Although recessive mutations in LAMA2 are already known to cause laminin α2-related
muscular dystrophy, a rare neuromuscular disorder, large deletions or duplications within …

A Game of Thrones at Human Centromeres II. A new molecular/evolutionary model

WR Rice - biorxiv, 2019 - biorxiv.org
Human centromeres are remarkable in four ways: they are i) defined epigenetically by an
elevated concentration of the histone H3 variant CENP-A, ii) inherited epigenetically by trans …

[HTML][HTML] Associated effects of copy number variants on economically important traits in Spanish Holstein dairy cattle

NB Sassi, Ó González-Recio, R de Paz-Del Río… - Journal of dairy …, 2016 - Elsevier
Copy number variants (CNV) are structural variants consisting of duplications or deletions of
genomic fragments longer than 1 kb that present variability in the population and are …