Phylogenomic approaches to detecting and characterizing introgression

MS Hibbins, MW Hahn - Genetics, 2022 - academic.oup.com
Phylogenomics has revealed the remarkable frequency with which introgression occurs
across the tree of life. These discoveries have been enabled by the rapid growth of methods …

Making sense of genomic islands of differentiation in light of speciation

JBW Wolf, H Ellegren - Nature Reviews Genetics, 2017 - nature.com
As populations diverge, genetic differences accumulate across the genome. Spurred by
rapid developments in sequencing technology, genome-wide population surveys of natural …

Widespread introgression across a phylogeny of 155 Drosophila genomes

A Suvorov, BY Kim, J Wang, EE Armstrong, D Peede… - Current Biology, 2022 - cell.com
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …

Recombination rate variation shapes barriers to introgression across butterfly genomes

SH Martin, JW Davey, C Salazar, CD Jiggins - PLoS biology, 2019 - journals.plos.org
Hybridisation and introgression can dramatically alter the relationships among groups of
species, leading to phylogenetic discordance across the genome and between populations …

Evaluating the use of ABBA–BABA statistics to locate introgressed loci

SH Martin, JW Davey, CD Jiggins - Molecular biology and …, 2015 - academic.oup.com
Several methods have been proposed to test for introgression across genomes. One method
tests for a genome-wide excess of shared derived alleles between taxa using Patterson's D …

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula …

R Burri, A Nater, T Kawakami, CF Mugal… - Genome …, 2015 - genome.cshlp.org
Speciation is a continuous process during which genetic changes gradually accumulate in
the genomes of diverging species. Recent studies have documented highly heterogeneous …

Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex

N Vijay, CM Bossu, JW Poelstra… - Nature …, 2016 - nature.com
Uncovering the genetic basis of species diversification is a central goal in evolutionary
biology. Yet, the link between the accumulation of genomic changes during population …

Signatures of archaic adaptive introgression in present-day human populations

F Racimo, D Marnetto… - Molecular biology and …, 2017 - academic.oup.com
Comparisons of DNA from archaic and modern humans show that these groups interbred,
and in some cases received an evolutionary advantage from doing so. This process …

Comparative studies on speciation: 30 years since Coyne and Orr

DR Matute, BS Cooper - Evolution, 2021 - academic.oup.com
Understanding the processes of population divergence and speciation remains a core
question in evolutionary biology. For nearly a hundred years evolutionary geneticists have …

Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies

KM Kozak, N Wahlberg, AFE Neild… - Systematic …, 2015 - academic.oup.com
Müllerian mimicry among Neotropical Heliconiini butterflies is an excellent example of
natural selection, associated with the diversification of a large continental-scale radiation …