Collision energies: Optimization strategies for bottom‐up proteomics

Á Révész, H Hevér, A Steckel… - Mass spectrometry …, 2023 - Wiley Online Library
Mass‐spectrometry coupled to liquid chromatography is an indispensable tool in the field of
proteomics. In the last decades, more and more complex and diverse biochemical and …

Considerations for defining+ 80 Da mass shifts in mass spectrometry-based proteomics: phosphorylation and beyond

LA Daly, CJ Clarke, A Po, SO Oswald… - Chemical …, 2023 - pubs.rsc.org
Post-translational modifications (PTMs) are ubiquitous and key to regulating protein function.
Understanding the dynamics of individual PTMs and their biological roles requires robust …

Histidine phosphorylation in human cells; a needle or phantom in the haystack?

NM Leijten, AJR Heck, S Lemeer - Nature Methods, 2022 - nature.com
It has been suggested that in mammalian cells histidine residues in proteins may become as
frequently phosphorylated as serine, threonine and tyrosine, and may play a key role in …

Bis (zinc (II)-dipicolylamine)-functionalized sub-2 μm core-shell microspheres for the analysis of N-phosphoproteome

Y Hu, B Jiang, Y Weng, Z Sui, B Zhao, Y Chen… - Nature …, 2020 - nature.com
Protein N-phosphorylation plays a critical role in central metabolism and
two/multicomponent signaling of prokaryotes. However, the current enrichment methods for …

Large-scale identification of protein histidine methylation in human cells

S Kapell, ME Jakobsson - NAR Genomics and Bioinformatics, 2021 - academic.oup.com
Methylation can occur on histidine, lysine and arginine residues in proteins and often serves
a regulatory function. Histidine methylation has recently attracted attention through the …

Selective enrichment of histidine phosphorylated peptides using molecularly imprinted polymers

A Incel, I Arribas Díez, C Wierzbicka, K Gajoch… - Analytical …, 2021 - ACS Publications
Protein histidine phosphorylation (pHis) is involved in molecular signaling networks in
bacteria, fungi, plants, and higher eukaryotes including mammals and is implicated in …

Neutrophil myeloperoxidase harbors distinct site-specific peculiarities in its glycosylation

KR Reiding, V Franc, MG Huitema, E Brouwer… - Journal of Biological …, 2019 - ASBMB
Anti-neutrophil cytoplasmic autoantibodies (ANCAs) are directed against lysosomal
components of neutrophils. ANCAs directed to proteinase 3 and myeloperoxidase (MPO) in …

PRD-containing virulence regulators (PCVRs) in pathogenic bacteria

JS Rom, MT Hart, KS McIver - Frontiers in Cellular and Infection …, 2021 - frontiersin.org
Bacterial pathogens rely on a complex network of regulatory proteins to adapt to hostile and
nutrient-limiting host environments. The p hosphoenolpyruvate p hosphotransferase s ystem …

PKM2 functions as a histidine kinase to phosphorylate PGAM1 and increase glycolysis shunts in cancer

Y Wang, H Shu, Y Qu, X Jin, J Liu, W Peng… - The EMBO …, 2024 - embopress.org
Abstract Phosphoglycerate mutase 1 (PGAM1) is a key node enzyme that diverts the
metabolic reactions from glycolysis into its shunts to support macromolecule biosynthesis for …

Clostridioides difficile phosphoproteomics shows an expansion of phosphorylated proteins in stationary growth phase

WK Smits, Y Mohammed, AH de Ru, V Cordo'… - Msphere, 2022 - Am Soc Microbiol
Phosphorylation is a posttranslational modification that can affect both housekeeping
functions and virulence characteristics in bacterial pathogens. In the Gram-positive …