An introduction to NMR-based approaches for measuring protein dynamics

IR Kleckner, MP Foster - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2011 - Elsevier
Proteins are inherently flexible at ambient temperature. At equilibrium, they are
characterized by a set of conformations that undergo continuous exchange within a …

NMR characterization of the dynamics of biomacromolecules

AG Palmer III - Chemical reviews, 2004 - ACS Publications
Function in biological systems is exquisitely dependent on spatial and temporal changes in
biomacromolecules. Innumerable biological processes ultimately rely on transduction of …

Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences

VA Jarymowycz, MJ Stone - Chemical reviews, 2006 - ACS Publications
Over the past 15 years there has been an explosion of research on the dynamical properties
of proteins, largely driven by the emergence of a handful of techniques that are sensitive to …

Characterization of the fast dynamics of protein amino acid side chains using NMR relaxation in solution

TI Igumenova, KK Frederick, AJ Wand - Chemical reviews, 2006 - ACS Publications
The physical basis of protein structure, dynamics, and function has been intensely studied
for several decades. Indeed, since the new millennium, there has been a tremendous …

An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

A Reiner, P Henklein… - Proceedings of the …, 2010 - National Acad Sciences
A reversible structural unlocking reaction, in which the close-packed van der Waals
interactions break cooperatively, has been found for the villin headpiece subdomain (HP35) …

Tackling force-field bias in protein folding simulations: folding of Villin HP35 and Pin WW domains in explicit water

J Mittal, RB Best - Biophysical journal, 2010 - cell.com
The ability to fold proteins on a computer has highlighted the fact that existing force fields
tend to be biased toward a particular type of secondary structure. Consequently, force fields …

New approaches to the dynamic interpretation and prediction of NMR relaxation data from proteins

R Brüschweiler - Current opinion in structural biology, 2003 - Elsevier
NMR relaxation experiments of isotopically labeled proteins provide a wealth of information
on reorientational global and local dynamics on nanosecond and subnanosecond …

Structural dynamics of bio-macromolecules by NMR: The slowly relaxing local structure approach

E Meirovitch, YE Shapiro, A Polimeno… - Progress in nuclear …, 2010 - Elsevier
Protein dynamics by NMR has been reviewed extensively in recent years [1–10]. These
surveys show decisively that information on structure should be complemented by …

On the relationship between NMR‐derived amide order parameters and protein backbone entropy changes

KA Sharp, E O'Brien, V Kasinath… - … : Structure, Function, and …, 2015 - Wiley Online Library
Molecular dynamics simulations are used to analyze the relationship between NMR‐derived
squared generalized order parameters of amide NH groups and backbone entropy. Amide …

Thermostability of enzymes from molecular dynamics simulations

T Zeiske, KA Stafford, AG Palmer III - Journal of chemical theory …, 2016 - ACS Publications
Thermodynamic stability is a central requirement for protein function, and one goal of protein
engineering is improvement of stability, particularly for applications in biotechnology. Herein …