Fish gut microbiome: current approaches and future perspectives

C Talwar, S Nagar, R Lal, RK Negi - Indian journal of microbiology, 2018 - Springer
In recent years, investigations of microbial flora associated with fish gut have deepened our
knowledge of the complex interactions occurring between microbes and host fish. The gut …

Comparative genomic analysis of 26 Sphingomonas and Sphingobium strains: dissemination of bioremediation capabilities, biodegradation potential and horizontal …

Q Zhao, S Yue, M Bilal, H Hu, W Wang… - Science of the Total …, 2017 - Elsevier
Bacteria belonging to the genera Sphingomonas and Sphingobium are known for their
ability to catabolize aromatic compounds. In this study, we analyzed the whole genome …

Survey of (Meta) genomic approaches for understanding microbial community dynamics

A Sharma, R Lal - Indian journal of microbiology, 2017 - Springer
Advancement in the next generation sequencing technologies has led to evolution of the
field of genomics and metagenomics in a slim duration with nominal cost at precipitous …

Comparative Genomics of Degradative Novosphingobium Strains With Special Reference to Microcystin-Degrading Novosphingobium sp. THN1

J Wang, C Wang, J Li, P Bai, Q Li, M Shen… - Frontiers in …, 2018 - frontiersin.org
Bacteria in genus Novosphingobium associated with biodegradation of substrates are
prevalent in environments such as lakes, soil, sea, wood and sediments. To better …

Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways

H Verma, R Kumar, P Oldach, N Sangwan, JP Khurana… - BMC genomics, 2014 - Springer
Background Sphingobium spp. are efficient degraders of a wide range of chlorinated and
aromatic hydrocarbons. In particular, strains which harbour the lin pathway genes mediating …

Structure of aryl O-demethylase offers molecular insight into a catalytic tyrosine-dependent mechanism

AC Kohler, MJL Mills, PD Adams… - Proceedings of the …, 2017 - National Acad Sciences
Some strains of soil and marine bacteria have evolved intricate metabolic pathways for
using environmentally derived aromatics as a carbon source. Many of these metabolic …

Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a …

M Tabata, S Ohhata, Y Nikawadori, K Kishida… - Dna …, 2016 - academic.oup.com
γ-Hexachlorocyclohexane (γ-HCH) is a recalcitrant man-made chlorinated pesticide. Here,
the complete genome sequences of four γ-HCH-degrading sphingomonad strains, which …

Insights into ongoing evolution of the hexachlorocyclohexane catabolic pathway from comparative genomics of ten Sphingomonadaceae strains

SL Pearce, JG Oakeshott… - G3: Genes, Genomes …, 2015 - academic.oup.com
Hexachlorocyclohexane (HCH), a synthetic organochloride, was first used as a broad-acre
insecticide in the 1940s, and many HCH-degrading bacterial strains have been isolated …

Pan-genome dynamics of Pseudomonas gene complements enriched across hexachlorocyclohexane dumpsite

A Sharma, N Sangwan, V Negi, P Kohli, JP Khurana… - BMC genomics, 2015 - Springer
Abstract Background Phylogenetic heterogeneity across Pseudomonas genus is
complemented by its diverse genome architecture enriched by accessory genetic elements …

Compound-specific stable isotope analysis: Implications in hexachlorocyclohexane in-vitro and field assessment

P Kohli, HH Richnow, R Lal - Indian journal of microbiology, 2017 - Springer
Assessment of biotic and abiotic degradation reactions by studying the variation in stable
isotopic compositions of organic contaminants in contaminated soil and aquifers is being …