R loops: from transcription byproducts to threats to genome stability

A Aguilera, T García-Muse - Molecular cell, 2012 - cell.com
RNA: DNA hybrid structures known as R loops were thought to be rare byproducts of
transcription. In the last decade, however, accumulating evidence has pointed to a new view …

R loops and links to human disease

P Richard, JL Manley - Journal of molecular biology, 2017 - Elsevier
Aberrant R-loop structures are increasingly being realized as an important contributor to
human disease. R loops, which are mainly co-transcriptional, abundant RNA/DNA hybrids …

[HTML][HTML] Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development

MAM Reijns, B Rabe, RE Rigby, P Mill, KR Astell… - Cell, 2012 - cell.com
The presence of ribonucleotides in genomic DNA is undesirable given their increased
susceptibility to hydrolysis. Ribonuclease (RNase) H enzymes that recognize and process …

The contribution of co-transcriptional RNA: DNA hybrid structures to DNA damage and genome instability

S Hamperl, KA Cimprich - DNA repair, 2014 - Elsevier
Accurate DNA replication and DNA repair are crucial for the maintenance of genome
stability, and it is generally accepted that failure of these processes is a major source of DNA …

Genetic aspects of mitochondrial genome evolution

M Bernt, A Braband, B Schierwater… - Molecular phylogenetics …, 2013 - Elsevier
Many years of extensive studies of metazoan mitochondrial genomes have established
differences in gene arrangements and genetic codes as valuable phylogenetic markers …

Loss-of-function mutations in MGME1 impair mtDNA replication and cause multisystemic mitochondrial disease

C Kornblum, TJ Nicholls, TB Haack, S Schöler… - Nature …, 2013 - nature.com
Known disease mechanisms in mitochondrial DNA (mtDNA) maintenance disorders alter
either the mitochondrial replication machinery (POLG, POLG2 and C10orf2),, or the …

Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity

JJ Kim, SY Lee, F Gong, AM Battenhouse… - Genes & …, 2019 - genesdev.cshlp.org
Bromodomain proteins (BRD) are key chromatin regulators of genome function and stability
as well as therapeutic targets in cancer. Here, we systematically delineate the contribution of …

Human mitochondrial DNA replication

IJ Holt, A Reyes - Cold Spring Harbor perspectives in …, 2012 - cshperspectives.cshlp.org
Elucidation of the process of DNA replication in mitochondria is in its infancy. For many
years, maintenance of the mitochondrial genome was regarded as greatly simplified …

Genome-wide mapping reveals R-loops associated with centromeric repeats in maize

Y Liu, Q Liu, H Su, K Liu, X Xiao, W Li, Q Sun… - Genome …, 2021 - genome.cshlp.org
R-loops are stable chromatin structures comprising a DNA: RNA hybrid and a displaced
single-stranded DNA. R-loops have been implicated in gene expression and chromatin …

An overview of mammalian mitochondrial DNA replication mechanisms

T Yasukawa, D Kang - The Journal of Biochemistry, 2018 - academic.oup.com
While the majority of DNA is enclosed within the nucleus, the mitochondria also contain their
own, separate DNA, the mitochondrial DNA (mtDNA). Mutations in mtDNA are associated …