Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

[HTML][HTML] Historical perspective and future directions: computational science in immuno-oncology

CA Ricker, K Meli, EM Van Allen - Journal for Immunotherapy of …, 2024 - ncbi.nlm.nih.gov
Immuno-oncology holds promise for transforming patient care having achieved durable
clinical response rates across a variety of advanced and metastatic cancers. Despite these …

Towards designing improved cancer immunotherapy targets with a peptide-MHC-I presentation model, HLApollo

WJ Thrift, NW Lounsbury, Q Broadwell… - Nature …, 2024 - nature.com
Based on the success of cancer immunotherapy, personalized cancer vaccines have
emerged as a leading oncology treatment. Antigen presentation on MHC class I (MHC-I) is …

NeoDesign: a computational tool for optimal selection of polyvalent neoantigen combinations

W Yu, H Yu, J Zhao, H Zhang, K Ke, Z Hu… - …, 2024 - academic.oup.com
Motivation Tumor polyvalent neoantigen mRNA vaccines are gaining prominence in
immunotherapy. The design of sequences in vaccine development is crucial for enhancing …

[HTML][HTML] Genetically Engineered T Cells and Recombinant Antibodies to Target Intracellular Neoantigens: Current Status and Future Directions

AM Waaga-Gasser, T Böldicke - International Journal of Molecular …, 2024 - mdpi.com
Recombinant antibodies and, more recently, T cell receptor (TCR)-engineered T cell
therapies represent two immunological strategies that have come to the forefront of clinical …

The genomics revolution comes to the immunopeptidome

PM Bruno - Genes & Immunity, 2024 - nature.com
Next-generation sequencing (NGS) has revolutionized nearly every area of biology,
allowing for exponential increases in information across genomes, transcriptomes …

Identification of an HLA-A*11:01-restricted neoepitope of mutant PIK3CA and its specific T cell receptors for cancer immunotherapy targeting hotspot driver mutations

M Shen, S Chen, X Han, Y Hao, J Wang, L Li… - Cancer Immunology …, 2024 - Springer
Hotspot driver mutations presented by human leukocyte antigens might be recognized by
anti-tumor T cells. Based on their advantages of tumor-specificity and immunogenicity …

Relevance of mutation-derived neoantigens and non-classical antigens for anticancer therapies

B Aparicio, P Theunissen… - Human Vaccines & …, 2024 - Taylor & Francis
Efficacy of cancer immunotherapies relies on correct recognition of tumor antigens by
lymphocytes, eliciting thus functional responses capable of eliminating tumor cells …

Clinical trials, challenges, and changes in tcr-based therapeutics for hematologic malignancies

MA Biernacki, M Bleakley - Expert Review of Hematology, 2025 - Taylor & Francis
Introduction T cells engineered to express antigen-specific T cell receptors (TCR; TCR-T)
are a promising class of immunotherapeutic for patients with hematologic malignancies. Like …

[HTML][HTML] Understanding and Therapeutic Application of Immune Response in Major Histocompatibility Complex (MHC) Diversity Using Multimodal Artificial Intelligence

Y Matsuzaka, R Yashiro - BioMedInformatics, 2024 - mdpi.com
Human Leukocyte Antigen (HLA) is like a device that monitors the internal environment of
the body. T lymphocytes immediately recognize the HLA molecules that are expressed on …