Precision medicine for metastatic breast cancer—limitations and solutions

M Arnedos, C Vicier, S Loi, C Lefebvre… - Nature reviews Clinical …, 2015 - nature.com
The development of precision medicine for the management of metastatic breast cancer is
an appealing concept; however, major scientific and logistical challenges hinder its …

[HTML][HTML] Sources of cancer neoantigens beyond single-nucleotide variants

AH Capietto, R Hoshyar, L Delamarre - International Journal of Molecular …, 2022 - mdpi.com
The success of checkpoint blockade therapy against cancer has unequivocally shown that
cancer cells can be effectively recognized by the immune system and eliminated. However …

Prognostic alternative mRNA splicing signature in non-small cell lung cancer

Y Li, N Sun, Z Lu, S Sun, J Huang, Z Chen, J He - Cancer letters, 2017 - Elsevier
Alternative splicing provides a major mechanism to generate protein diversity. Increasing
evidence suggests a link of dysregulation of splicing associated with cancer. Genome-wide …

Systematic profiling of alternative splicing signature reveals prognostic predictor for ovarian cancer

J Zhu, Z Chen, L Yong - Gynecologic oncology, 2018 - Elsevier
Objective The majority of genes are alternatively spliced and growing evidence suggests
that alternative splicing is modified in cancer and is associated with cancer progression …

Discovering personalized driver mutation profiles of single samples in cancer by network control strategy

WF Guo, SW Zhang, LL Liu, F Liu, QQ Shi… - …, 2018 - academic.oup.com
Motivation It is a challenging task to discover personalized driver genes that provide crucial
information on disease risk and drug sensitivity for individual patients. However, few …

[HTML][HTML] SURVIV for survival analysis of mRNA isoform variation

S Shen, Y Wang, C Wang, YN Wu, Y Xing - Nature communications, 2016 - nature.com
The rapid accumulation of clinical RNA-seq data sets has provided the opportunity to
associate mRNA isoform variations to clinical outcomes. Here we report a statistical method …

[PDF][PDF] Vitamin D receptor signaling and cancer

MJ Campbell, DL Trump - Endocrinology and metabolism clinics of North …, 2017 - Elsevier
The vitamin D receptor binds the seco-steroid hormone 1, 25 (OH) 2D3 with high affinity and
controls gene programs that include a significant component of the control of serum calcium …

[HTML][HTML] Molecular subtyping in colorectal cancer: A bridge to personalized therapy

C Wang, H Zhang, Y Liu, Y Wang… - Oncology …, 2023 - spandidos-publications.com
Colorectal cancer (CRC) is a malignant tumor and a major cause of morbidity and mortality
globally. The classic Tumor‑Node‑Metastasis staging system, which currently underlies the …

[HTML][HTML] Breast cancer and the other non-coding RNAs

D Dvorská, D Braný, M Ňachajová, E Halašová… - International Journal of …, 2021 - mdpi.com
Breast cancer is very heterogenous and the most common gynaecological cancer, with
various factors affecting its development. While its impact on human lives and national …

Survival-associated alternative splicing signatures in esophageal carcinoma

S Mao, Y Li, Z Lu, Y Che, S Sun, J Huang, Y Lei… - …, 2019 - academic.oup.com
Alternative splicing (AS), a major mechanism for the enhancement of transcriptome and
proteome diversity, has been widely demonstrated to be involved in the full spectrum of …