Bioinformatics in bioscience and bioengineering: recent advances, applications, and perspectives

K Uesaka, H Oka, R Kato, K Kanie, T Kojima… - Journal of bioscience …, 2022 - Elsevier
Recent advances have led to the emergence of highly comprehensive and analytical
approaches, such as omics analysis and high-resolution, time-resolved bioimaging analysis …

[HTML][HTML] All models are wrong, but some are useful: Establishing standards for stem cell-based embryo models

E Posfai, F Lanner, C Mulas, HG Leitch - Stem Cell Reports, 2021 - cell.com
Detailed studies of the embryo allow an increasingly mechanistic understanding of
development, which has proved of profound relevance to human disease. The last decade …

Patient derived stem cells for discovery and validation of novel pathogenic variants in inherited retinal disease

NK Mullin, AP Voigt, JA Cooke, LR Bohrer… - Progress in retinal and …, 2021 - Elsevier
Our understanding of inherited retinal disease has benefited immensely from molecular
genetic analysis over the past several decades. New technologies that allow for increasingly …

Cytoskeletal tension regulates mesodermal spatial organization and subsequent vascular fate

Q Smith, N Rochman, AM Carmo… - Proceedings of the …, 2018 - National Acad Sciences
Morphogenesis during human development relies on the interplay between physiochemical
cues that are mediated in part by cellular density and cytoskeletal tension. Here, we …

TNTdetect. AI: A deep learning model for automated detection and counting of tunneling nanotubes in microscopy images

Y Ceran, H Ergüder, K Ladner, S Korenfeld, K Deniz… - Cancers, 2022 - mdpi.com
Simple Summary Microscopy is central to many areas of biomedical science research,
including cancer research, and is critical for understanding basic pathophysiology …

[HTML][HTML] Deep-learning-based multi-class segmentation for automated, non-invasive routine assessment of human pluripotent stem cell culture status

T Piotrowski, O Rippel, A Elanzew, B Nießing… - Computers in biology …, 2021 - Elsevier
Human induced pluripotent stem cells (hiPSCs) are capable of differentiating into a variety of
human tissue cells. They offer new opportunities for personalized medicine and drug …

Live-cell imaging of subcellular structures for quantitative evaluation of pluripotent stem cells

K Nishimura, H Ishiwata, Y Sakuragi, Y Hayashi… - Scientific Reports, 2019 - nature.com
Pluripotent stem cells (PSCs) have various degrees of pluripotency, which necessitates
selection of PSCs with high pluripotency before their application to regenerative medicine …

UV/ozone surface modification combined with atmospheric pressure plasma irradiation for cell culture plastics to improve pluripotent stem cell culture

H Suzuki, K Kasai, Y Kimura, S Miyata - Materials Science and Engineering …, 2021 - Elsevier
Culturing pluripotent stem cells effectively requires substrates coated with feeder cell layers
or cell-adhesive matrices. It is difficult to employ pluripotent stem cells as resources for …

Kinetic analysis of enzymes immobilized in porous film arrays

HD Neira, AE Herr - Analytical chemistry, 2017 - ACS Publications
Measuring the catalytic activity of immobilized enzymes underpins development of
biosensing, bioprocessing, and analytical chemistry tools. To expand the range of …

[HTML][HTML] Metabolic characterization of a paused-like pluripotent state

MI Sousa, B Correia, AS Rodrigues… - … et Biophysica Acta (BBA …, 2020 - Elsevier
Embryonic diapause is a conserved reproductive strategy in which development arrests at
the blastocyst phase. Recently mammalian target of rapamycin (mTOR) inhibition was …