Determinants of the rate of protein sequence evolution

J Zhang, JR Yang - Nature Reviews Genetics, 2015 - nature.com
The rate and mechanism of protein sequence evolution have been central questions in
evolutionary biology since the 1960s. Although the rate of protein sequence evolution …

[图书][B] RNA, the epicenter of genetic information

J Mattick, P Amaral - 2023 - library.oapen.org
The origin story and emergence of molecular biology is muddled. The early triumphs in
bacterial genetics and the complexity of animal and plant genomes complicate an intricate …

Active DNA demethylation at enhancers during the vertebrate phylotypic period

O Bogdanović, AH Smits, E de la Calle Mustienes… - Nature …, 2016 - nature.com
The vertebrate body plan and organs are shaped during a conserved embryonic phase
called the phylotypic stage. However, the mechanisms that guide the epigenome through …

The earliest transcribed zygotic genes are short, newly evolved, and different across species

P Heyn, M Kircher, A Dahl, J Kelso, P Tomancak… - Cell reports, 2014 - cell.com
The transition from maternal to zygotic control is fundamental to the life cycle of all
multicellular organisms. It is widely believed that genomes are transcriptionally inactive from …

Coming of age: orphan genes in plants

ZW Arendsee, L Li, ES Wurtele - Trends in plant science, 2014 - cell.com
Sizable minorities of protein-coding genes from every sequenced eukaryotic and prokaryotic
genome are unique to the species. These so-called 'orphan genes' may evolve de novo from …

A transcriptomic hourglass in brown algae

JS Lotharukpong, M Zheng, R Luthringer, D Liesner… - Nature, 2024 - nature.com
Complex multicellularity has emerged independently across a few eukaryotic lineages and
is often associated with the rise of elaborate, tightly coordinated developmental processes …

The developmental hourglass model: a predictor of the basic body plan?

N Irie, S Kuratani - Development, 2014 - journals.biologists.com
The hourglass model of embryonic evolution predicts an hourglass-like divergence during
animal embryogenesis–with embryos being more divergent at the earliest and latest stages …

Evidence for active maintenance of phylotranscriptomic hourglass patterns in animal and plant embryogenesis

HG Drost, A Gabel, I Grosse… - Molecular biology and …, 2015 - academic.oup.com
The developmental hourglass model has been used to describe the morphological
transitions of related species throughout embryogenesis. Recently, quantifiable approaches …

Character identity mechanisms: a conceptual model for comparative-mechanistic biology

J DiFrisco, AC Love, GP Wagner - Biology & Philosophy, 2020 - Springer
There have been repeated attempts in the history of comparative biology to provide a
mechanistic account of morphological homology. However, it is well-established that …

Constrained vertebrate evolution by pleiotropic genes

H Hu, M Uesaka, S Guo, K Shimai, TM Lu, F Li… - Nature ecology & …, 2017 - nature.com
Despite morphological diversification of chordates over 550 million years of evolution, their
shared basic anatomical pattern (or 'bodyplan') remains conserved by unknown …