Pathogenicity islands in bacterial pathogenesis

H Schmidt, M Hensel - Clinical microbiology reviews, 2004 - Am Soc Microbiol
In this review, we focus on a group of mobile genetic elements designated pathogenicity
islands (PAI). These elements play a pivotal role in the virulence of bacterial pathogens of …

Biased gene conversion and the evolution of mammalian genomic landscapes

L Duret, N Galtier - Annual review of genomics and human …, 2009 - annualreviews.org
Recombination is typically thought of as a symmetrical process resulting in large-scale
reciprocal genetic exchanges between homologous chromosomes. Recombination events …

Initial sequencing and comparative analysis of the mouse genome

European Bioinformatics Institute: Birney Ewan 3 … - Nature, 2002 - nature.com
The sequence of the mouse genome is a key informational tool for understanding the
contents of the human genome and a key experimental tool for biomedical research. Here …

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

RE Green, EL Braun, J Armstrong, D Earl, N Nguyen… - Science, 2014 - science.org
INTRODUCTION Crocodilians and birds are the two extant clades of archosaurs, a group
that includes the extinct dinosaurs and pterosaurs. Fossils suggest that living crocodilians …

Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data

JP Fortin, KD Hansen - Genome biology, 2015 - Springer
Abstract Analysis of Hi-C data has shown that the genome can be divided into two
compartments called A/B compartments. These compartments are cell-type specific and are …

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

N Galtier, G Piganeau, D Mouchiroud, L Duret - Genetics, 2001 - academic.oup.com
908 N. Galtier et al. metes averaged over germ cells remain Mendelian. If, however, the
repair process is biased toward, say, G: C pairs, then allele frequencies would evolve in a …

Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome

Z Zhang, PM Harrison, Y Liu, M Gerstein - Genome research, 2003 - genome.cshlp.org
Processed pseudogenes were created by reverse-transcription of mRNAs; they provide
snapshots of ancient genes existing millions of years ago in the genome. To find them in the …

Isochores and the evolutionary genomics of vertebrates

G Bernardi - Gene, 2000 - Elsevier
The nuclear genomes of vertebrates are mosaics of isochores, very long stretches (≫
300kb) of DNA that are homogeneous in base composition and are compositionally …

Accurate and comprehensive sequencing of personal genomes

SS Ajay, SCJ Parker, HO Abaan, KVF Fajardo… - Genome …, 2011 - genome.cshlp.org
As whole-genome sequencing becomes commoditized and we begin to sequence and
analyze personal genomes for clinical and diagnostic purposes, it is necessary to …

Genome evolution and the evolution of exon-shuffling—a review

L Patthy - Gene, 1999 - Elsevier
Recent studies on the genomes of protists, plants, fungi and animals confirm that the
increase in genome size and gene number in different eukaryotic lineages is paralleled by a …