Genome dynamics during experimental evolution

JE Barrick, RE Lenski - Nature Reviews Genetics, 2013 - nature.com
Evolutionary changes in organismal traits may occur either gradually or suddenly. However,
until recently, there has been little direct information about how phenotypic changes are …

Evolution of the mutation rate

M Lynch - TRENDS in Genetics, 2010 - cell.com
Understanding the mechanisms of evolution requires information on the rate of appearance
of new mutations and their effects at the molecular and phenotypic levels. Although …

Rate of de novo mutations and the importance of father's age to disease risk

A Kong, ML Frigge, G Masson, S Besenbacher… - Nature, 2012 - nature.com
Mutations generate sequence diversity and provide a substrate for selection. The rate of de
novo mutations is therefore of major importance to evolution. Here we conduct a study of …

Kinetics and fidelity of the repair of Cas9-induced double-strand DNA breaks

EK Brinkman, T Chen, M de Haas, HA Holland… - Molecular cell, 2018 - cell.com
The RNA-guided DNA endonuclease Cas9 is a powerful tool for genome editing. Little is
known about the kinetics and fidelity of the double-strand break (DSB) repair process that …

Revisiting an old riddle: what determines genetic diversity levels within species?

EM Leffler, K Bullaughey, DR Matute, WK Meyer… - 2012 - journals.plos.org
Understanding why some species have more genetic diversity than others is central to the
study of ecology and evolution, and carries potentially important implications for …

Evolution of resistance against CRISPR/Cas9 gene drive

RL Unckless, AG Clark, PW Messer - Genetics, 2017 - academic.oup.com
CRISPR/Cas9 gene drive (CGD) promises to be a highly adaptable approach for spreading
genetically engineered alleles throughout a species, even if those alleles impair …

Precise estimates of mutation rate and spectrum in yeast

YO Zhu, ML Siegal, DW Hall… - Proceedings of the …, 2014 - National Acad Sciences
Mutation is the ultimate source of genetic variation. The most direct and unbiased method of
studying spontaneous mutations is via mutation accumulation (MA) lines. Until recently, MA …

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

S Ossowski, K Schneeberger, JI Lucas-Lledó… - science, 2010 - science.org
To take complete advantage of information on within-species polymorphism and divergence
from close relatives, one needs to know the rate and the molecular spectrum of spontaneous …

Rate, molecular spectrum, and consequences of human mutation

M Lynch - Proceedings of the National Academy of …, 2010 - National Acad Sciences
Although mutation provides the fuel for phenotypic evolution, it also imposes a substantial
burden on fitness through the production of predominantly deleterious alleles, a matter of …

Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps

NR Garud, PW Messer, EO Buzbas, DA Petrov - PLoS genetics, 2015 - journals.plos.org
Adaptation from standing genetic variation or recurrent de novo mutation in large
populations should commonly generate soft rather than hard selective sweeps. In contrast to …