Emergence and spread of a sub-lineage of SARS-CoV-2 Alpha variant B. 1.1. 7 in Europe, and with further evolution of spike mutation accumulations shared with the …

M Stadtmüller, A Laubner, F Rost, S Winkler… - Virus …, 2022 - academic.oup.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) evolution plays a
significant role in shaping the dynamics of the coronavirus disease 2019 pandemic. To …

Genomic epidemiology of SARS-CoV-2 in Senegal in 2020-2021

AA Ba, R Coppée, A Dieng, J Manneh, M Fall… - The Journal of Infection …, 2024 - jidc.org
Abstract Introduction: In Senegal, molecular diagnosis was widely used for the detection and
management of COVID-19 patients. However, genomic surveillance was very limited in the …

Neighbourhood watch: genomic epidemiology of SARS-CoV-2 variants circulating in a German federal state, Mecklenburg-Western Pomerania, in 2020–2022

C Kohler, J King, L Stacker, KV Goller… - Emerging Microbes & …, 2023 - Taylor & Francis
Global and even national genome surveillance approaches do not provide the resolution
necessary for rapid and accurate direct response by local public health authorities. Hence, a …

SARS-CoV-2 Spatiotemporal Genomic and Molecular Analysis of the First Wave of the COVID-19 Pandemic in Macaé, the Brazilian Capital of Oil

B da-Costa-Rodrigues, C Cheohen… - International Journal of …, 2022 - mdpi.com
The SARS-CoV-2 virus infection led to millions of deaths during the COVID-19 pandemic.
Hundreds of workers from several other Brazilian cities, as well as from other countries …

The potential impact of the spreading of highly transmissible Omicron variant XBB. 1.5 and JN. 1 on the evolution of SARS-CoV-2

B Yi - medRxiv, 2024 - medrxiv.org
In spite of three-year pandemic time caused by Covid-19, the trend and impact of the
evolution of SARS-CoV-2 remain unclear. For newly emerging variants, it is still hard to …

Investigating the cause of a 2021 winter wave of COVID-19 in a border region in Eastern Germany: a mixed-methods study, August to November 2021

B Yi, E Patrasová, L Šimůnková, F Rost… - Epidemiology & …, 2024 - cambridge.org
It is so far unclear how the COVID-19 winter waves started and what should be done to
prevent possible future waves. In this study, we deciphered the dynamic course of a winter …

On the origin and propagation of the Covid-19 outbreak in the Italian province of Trento, a tourist region of Northern Italy

L Bianco, M Moser, A Silverj, D Micheletti, G Lorenzin… - Viruses, 2022 - mdpi.com
Background: Trentino is an Italian province with a tourism-based economy, bordering the
regions of Lombardy and Veneto, where the two earliest and largest outbreaks of COVID-19 …

Detection of SARS-CoV-2 infection clusters: The useful combination of spatiotemporal clustering and genomic analyses

Y Choi, A Ladoy, D De Ridder, D Jacot… - Frontiers in Public …, 2022 - frontiersin.org
Background The need for effective public health surveillance systems to track virus spread
for targeted interventions was highlighted during the COVID-19 pandemic. It spurred an …