Fundamental studies of functional nucleic acids: aptamers, riboswitches, ribozymes and DNAzymes

R Micura, C Höbartner - Chemical Society Reviews, 2020 - pubs.rsc.org
This review aims at juxtaposing common versus distinct structural and functional strategies
that are applied by aptamers, riboswitches, and ribozymes/DNAzymes. Focusing on recently …

RNA display methods for the discovery of bioactive macrocycles

Y Huang, MM Wiedmann, H Suga - Chemical reviews, 2018 - ACS Publications
The past two decades have witnessed the emergence of macrocycles, including macrocyclic
peptides, as a promising yet underexploited class of de novo drug candidates. Both …

Flexizymes for genetic code reprogramming

Y Goto, T Katoh, H Suga - Nature protocols, 2011 - nature.com
Genetic code reprogramming is a method for the reassignment of arbitrary codons from
proteinogenic amino acids to nonproteinogenic ones; thus, specific sequences of …

A highly flexible tRNA acylation method for non-natural polypeptide synthesis

H Murakami, A Ohta, H Ashigai, H Suga - Nature Methods, 2006 - nature.com
Here we describe a de novo tRNA acylation system, the flexizyme (Fx) system, for the
preparation of acyl tRNAs with nearly unlimited selection of amino and hydroxy acids and …

A RaPID way to discover nonstandard macrocyclic peptide modulators of drug targets

T Passioura, H Suga - Chemical Communications, 2017 - pubs.rsc.org
Studies of the fundamental nature of RNA catalysis and the potential mechanism of a shift
from the “RNA world” to proteinaceous life lead us to identify a set of ribozymes (flexizymes) …

DNA‐Encoded Libraries: Towards Harnessing their Full Power with Darwinian Evolution

M Dockerill, N Winssinger - Angewandte Chemie International …, 2023 - Wiley Online Library
DNA‐encoded library (DEL) technologies are transforming the drug discovery process,
enabling the identification of ligands at unprecedented speed and scale. DEL makes use of …

Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro

J Lee, KJ Schwarz, DS Kim, JS Moore… - Nature …, 2020 - nature.com
Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is
challenging due to their poor compatibility with the translation apparatus, which evolved to …

In vitro genetic code reprogramming for the expansion of usable noncanonical amino acids

T Katoh, H Suga - Annual Review of Biochemistry, 2022 - annualreviews.org
Genetic code reprogramming has enabled us to ribosomally incorporate various
nonproteinogenic amino acids (npAAs) into peptides in vitro. The repertoire of usable npAAs …

Reprogramming the translation initiation for the synthesis of physiologically stable cyclic peptides

Y Goto, A Ohta, Y Sako, Y Yamagishi… - ACS chemical …, 2008 - ACS Publications
The initiation codon dictates that the translation initiation event exclusively begins with
methionine. We report here a new technology to reprogram the initiation event, where …

Directing evolution of novel ligands by mRNA display

G Kamalinia, BJ Grindel, TT Takahashi… - Chemical Society …, 2021 - pubs.rsc.org
mRNA display is a powerful biological display platform for the directed evolution of proteins
and peptides. mRNA display libraries covalently link the displayed peptide or protein …