[HTML][HTML] Deciphering the multi-scale, quantitative cis-regulatory code

S Kim, J Wysocka - Molecular cell, 2023 - cell.com
Uncovering the cis-regulatory code that governs when and how much each gene is
transcribed in a given genome and cellular state remains a central goal of biology. Here, we …

Transposable elements in mammalian chromatin organization

HA Lawson, Y Liang, T Wang - Nature Reviews Genetics, 2023 - nature.com
Transposable elements (TEs) are mobile DNA elements that comprise almost 50% of
mammalian genomic sequence. TEs are capable of making additional copies of themselves …

Pharmacogenomics: driving personalized medicine

W Sadee, D Wang, K Hartmann, AE Toland - Pharmacological reviews, 2023 - ASPET
Personalized medicine tailors therapies, disease prevention, and health maintenance to the
individual, with pharmacogenomics serving as a key tool to improve outcomes and prevent …

scNanoHi-C: a single-cell long-read concatemer sequencing method to reveal high-order chromatin structures within individual cells

W Li, J Lu, P Lu, Y Gao, Y Bai, K Chen, X Su, M Li… - Nature …, 2023 - nature.com
The high-order three-dimensional (3D) organization of regulatory genomic elements
provides a topological basis for gene regulation, but it remains unclear how multiple …

[HTML][HTML] Reversing the central dogma: RNA-guided control of DNA in epigenetics and genome editing

HY Chang, LS Qi - Molecular cell, 2023 - cell.com
Summary The Central Dogma of the flow of genetic information is arguably the crowning
achievement of 20 th century molecular biology. Reversing the flow of information from RNA …

[HTML][HTML] Regeneration of the heart: from molecular mechanisms to clinical therapeutics

QY Guo, JQ Yang, XX Feng, YJ Zhou - Military Medical Research, 2023 - Springer
Heart injury such as myocardial infarction leads to cardiomyocyte loss, fibrotic tissue
deposition, and scar formation. These changes reduce cardiac contractility, resulting in heart …

[HTML][HTML] Long noncoding RNAs in cardiovascular disease

A Kohlmaier, LM Holdt, D Teupser - Current opinion in cardiology, 2023 - journals.lww.com
Summary lncRNA research is passing the stage of enumerating lncRNAs or recording
simplified on-off expression switches. Mechanistic analyses are starting to reveal …

ChromLoops: a comprehensive database for specific protein-mediated chromatin loops in diverse organisms

Q Zhou, S Cheng, S Zheng, Z Wang… - Nucleic Acids …, 2023 - academic.oup.com
Chromatin loops (or chromatin interactions) are important elements of chromatin structures.
Disruption of chromatin loops is associated with many diseases, such as cancer and …

[HTML][HTML] An encyclopedia of enhancer-gene regulatory interactions in the human genome

AR Gschwind, KS Mualim, A Karbalayghareh… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Identifying transcriptional enhancers and their target genes is essential for understanding
gene regulation and the impact of human genetic variation on disease 1–6. Here we create …

The coming of age of liquid biopsy in neuro-oncology

G Berzero, V Pieri, P Mortini, M Filippi, G Finocchiaro - Brain, 2023 - academic.oup.com
The clinical role of liquid biopsy in oncology is growing significantly. In gliomas and other
brain tumours, targeted sequencing of cell-free DNA (cfDNA) from CSF may help differential …