High-throughput sequencing (HTS) technologies have become indispensable tools
assisting plant virus diagnostics and research thanks to their ability to detect any plant virus …

In the current era, one of the major challenges is to manage the treatment of drug/antibiotic-
resistant strains of bacteria. Phage therapy, a century-old technique, may serve as an …

Introduction As new computational tools for detecting phage in metagenomes are being
rapidly developed, a critical need has emerged to develop systematic benchmarks. Methods …

Background The prediction of bacteriophage sequences in metagenomic datasets has
become a topic of considerable interest, leading to the development of many novel …

Viruses are the most abundant biological entities on earth, and play vital roles in many
aspects of microbial communities. As major human pathogens, viruses have caused huge …

Viral sequences are poorly annotated in environmental samples, a major roadblock to
understanding how viruses influence microbial community structure. Current annotation …

Phages are among the most abundant and diverse biological entities on earth. Phage
prediction from sequence data is a crucial first step to understanding their impact on the …

Understanding the ecological impacts of viruses on natural and engineered ecosystems
relies on the accurate identification of viral sequences from community sequencing data. To …

High-throughput sequencing has provided the capacity of broad virus detection for both
known and unknown viruses in a variety of hosts and habitats. It has been successfully …

Background Modern sequencing technologies offer extraordinary opportunities for virus
discovery and virome analysis. Annotation of viral sequences from metagenomic data …