R loops: from transcription byproducts to threats to genome stability

A Aguilera, T García-Muse - Molecular cell, 2012 - cell.com
RNA: DNA hybrid structures known as R loops were thought to be rare byproducts of
transcription. In the last decade, however, accumulating evidence has pointed to a new view …

DNA repair pathways as targets for cancer therapy

T Helleday, E Petermann, C Lundin, B Hodgson… - Nature Reviews …, 2008 - nature.com
DNA repair pathways can enable tumour cells to survive DNA damage that is induced by
chemotherapeutic treatments; therefore, inhibitors of specific DNA repair pathways might …

[PDF][PDF] The contribution of DNA repair pathways to genome editing and evolution in filamentous pathogens

J Huang, DE Cook - FEMS Microbiology Reviews, 2022 - academic.oup.com
DNA double-strand breaks require repair or risk corrupting the language of life. To ensure
genome integrity and viability, multiple DNA double-strand break repair pathways function in …

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability

RD Paulsen, DV Soni, R Wollman, AT Hahn, MC Yee… - Molecular cell, 2009 - cell.com
Signaling pathways that respond to DNA damage are essential for the maintenance of
genome stability and are linked to many diseases, including cancer. Here, a genome-wide …

Functional targeting of DNA damage to a nuclear pore-associated SUMO-dependent ubiquitin ligase

S Nagai, K Dubrana, M Tsai-Pflugfelder, MB Davidson… - Science, 2008 - science.org
Recent findings suggest important roles for nuclear organization in gene expression. In
contrast, little is known about how nuclear organization contributes to genome stability …

Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases

MB Smolka, CP Albuquerque… - Proceedings of the …, 2007 - National Acad Sciences
Understanding the role of DNA damage checkpoint kinases in the cellular response to
genotoxic stress requires the knowledge of their substrates. Here, we report the use of …

The nuclear envelope in genome organization, expression and stability

K Mekhail, D Moazed - Nature reviews Molecular cell biology, 2010 - nature.com
Non-random positioning of chromosomal domains relative to each other and to nuclear
landmarks is a common feature of eukaryotic genomes. In particular, the distribution of DNA …

[HTML][HTML] The replication checkpoint protects fork stability by releasing transcribed genes from nuclear pores

R Bermejo, T Capra, R Jossen, A Colosio, C Frattini… - Cell, 2011 - cell.com
Transcription hinders replication fork progression and stability, and the Mec1/ATR
checkpoint protects fork integrity. Examining checkpoint-dependent mechanisms controlling …

SWR1 and INO80 chromatin remodelers contribute to DNA double-strand break perinuclear anchorage site choice

C Horigome, Y Oma, T Konishi, R Schmid, I Marcomini… - Molecular cell, 2014 - cell.com
Persistent DNA double-strand breaks (DSBs) are recruited to the nuclear periphery in
budding yeast. Both the Nup84 pore subcomplex and Mps3, an inner nuclear membrane …

Nuclear pore proteins and the control of genome functions

A Ibarra, MW Hetzer - Genes & development, 2015 - genesdev.cshlp.org
Nuclear pore complexes (NPCs) are composed of several copies of∼ 30 different proteins
called nucleoporins (Nups). NPCs penetrate the nuclear envelope (NE) and regulate the …