Tudor–dimethylarginine interactions: the condensed version

D Šimčíková, S Gelles-Watnick… - Trends in Biochemical …, 2023 - cell.com
Biomolecular condensates (BMCs) can facilitate or inhibit diverse cellular functions. BMC
formation is driven by noncovalent protein–protein, protein–RNA, and RNA–RNA …

Proteomic tools to study phosphorylation of intrinsically disordered proteins

B Spolaore, L Secco, G Rocca… - Expert Review of …, 2023 - Taylor & Francis
ABSTRACT Introduction Intrinsically disordered proteins (IDPs) represent a family of
proteins that lack secondary or tertiary structure. IDPs are hubs in interaction networks …

Independent transcriptomic and proteomic regulation by type I and II protein arginine methyltransferases

MI Maron, SM Lehman, S Gayatri, JD DeAngelo… - IScience, 2021 - cell.com
Protein arginine methyltransferases (PRMTs) catalyze the post-translational
monomethylation (Rme1), asymmetric (Rme2a), or symmetric (Rme2s) dimethylation of …

Phosphorylation regulates arginine-rich RNA-binding protein solubility and oligomerization

SR Kundinger, EB Dammer, L Yin, C Hurst… - Journal of Biological …, 2021 - ASBMB
Posttranslational modifications (PTMs) such as phosphorylation of RNA-binding proteins
(RBPs) regulate several critical steps in RNA metabolism, including spliceosome assembly …

Impact of Charge State on Characterization of Large Middle-Down Sized Peptides by Tandem Mass Spectrometry

J Hellinger, JS Brodbelt - Journal of the American Society for …, 2024 - ACS Publications
Fragmentation trends of large peptides were characterized by five activation methods,
including HCD, ETD, EThcD, 213 nm UVPD, and 193 nm UVPD. Sequence coverages and …

CLK1 reorganizes the splicing factor U1-70K for early spliceosomal protein assembly

BE Aubol, JM Wozniak, L Fattet… - Proceedings of the …, 2021 - National Acad Sciences
Early spliceosome assembly requires phosphorylation of U1-70K, a constituent of the U1
small nuclear ribonucleoprotein (snRNP), but it is unclear which sites are phosphorylated …

Targeted quantification of detergent-insoluble RNA-binding proteins in human brain reveals stage and disease specific co-aggregation in Alzheimer's disease

Q Guo, EB Dammer, M Zhou, SR Kundinger… - Frontiers in Molecular …, 2021 - frontiersin.org
Core spliceosome and related RNA-binding proteins aggregate in Alzheimer's disease (AD)
brain even in early asymptomatic stages (AsymAD) of disease. To assess the specificity of …

ETD-Based Proteomic Profiling Improves Arginine Methylation Identification and Reveals Novel PRMT5 Substrates

L Lu, Z Ye, R Zhang, JV Olsen, Y Yuan… - Journal of Proteome …, 2024 - ACS Publications
Protein arginine methylations are important post-translational modifications (PTMs) in
eukaryotes, regulating many biological processes. However, traditional collision-based …

Discovery of Arginine Methylation, Phosphorylation, and Their Co-occurrence in Condensate-Associated Proteins in Saccharomyces cerevisiae

JJ Hamey, A Nguyen, MR Wilkins - Journal of proteome research, 2021 - ACS Publications
The formation of condensates in membraneless organelles is thought to be driven by protein
phase separation. Arginine methylation and serine/threonine phosphorylation are important …

GeLC‐FAIMS‐MS workflow for in‐depth middle‐down proteomics

A Takemori, PT Kaulich, R Konno, Y Kawashima… - …, 2024 - Wiley Online Library
Middle‐down proteomics (MDP) is an analytical approach in which protein samples are
digested with proteases such as Glu‐C to generate large peptides (> 3 kDa) that are …