Decoding errors and the involvement of the E-site

KH Nierhaus - Biochimie, 2006 - Elsevier
Life depends on the faithful translation of the genetic information into proteins. Ribosomes
have developed remarkable mechanisms to ensure the accurate synthesis of proteins. In the …

Coupling of mRNA structure rearrangement to ribosome movement during bypassing of non-coding regions

J Chen, A Coakley, M O'Connor, A Petrov, SE O'Leary… - Cell, 2015 - cell.com
Nearly half of the ribosomes translating a particular bacteriophage T4 mRNA bypass a
region of 50 nt, resuming translation 3′ of this gap. How this large-scale, specific hop …

[PDF][PDF] 密码子优化策略在异源蛋白表达中的应用

杨云彭, 马晓焉, 霍毅欣 - 生物工程学报, 2019 - researchgate.net
酶在医疗和生物药物方面有着广泛的应用, 不仅可以用来治疗各种疾病, 还在临床诊断和人体
健康等方面有着重要的影响. 利用微生物来表达异源蛋白已经成为获取酶最简单快速的方法 …

Over expression of a tRNALeu isoacceptor changes charging pattern of leucine tRNAs and reveals new codon reading

MA Sørensen, J Elf, E Bouakaz, T Tenson… - Journal of molecular …, 2005 - Elsevier
During mRNA translation, synonymous codons for one amino acid are often read by different
isoaccepting tRNAs. The theory of selective tRNA charging predicts greatly varying …

Estimation of peptide elongation times from ribosome profiling spectra

MY Pavlov, G Ullman, Z Ignatova… - Nucleic Acids …, 2021 - academic.oup.com
Ribosome profiling spectra bear rich information on translation control and dynamics. Yet,
due to technical biases in library generation, extracting quantitative measures of discrete …

What makes ribosome-mediated transcriptional attenuation sensitive to amino acid limitation?

J Elf, M Ehrenberg - PLoS computational biology, 2005 - journals.plos.org
Ribosome-mediated transcriptional attenuation mechanisms are commonly used to control
amino acid biosynthetic operons in bacteria. The mRNA leader of such an operon contains …

Mesoscopic kinetics and its applications in protein synthesis

J Elf, J Paulsson, O Berg, M Ehrenberg - Systems Biology: Definitions and …, 2005 - Springer
Molecular biology emerged through unification of genetics and nucleic acid chemistry that
took place with the discovery of the double helix (Watson and Crick 1953). Accordingly …

Versatile Implementations of an Improved Cell-Free System for Protein Biosynthesis: Functional and structural studies of ribosomal protein L11 and class II release …

L Bouakaz - 2006 - diva-portal.org
The versatility of the cellYfree system has provided the additional possibility to study the
effects of class II release factor RF3 mutations in mediating fast dissociation of class I …

Flow and fluctuations in protein synthesis

J Elf - vcp.med.harvard.edu
I will discuss a theoretical model for how the charging levels of different tRNA isoacceptors
respond when supply of their amino acid becomes growth limiting [1]. The charged levels of …

Gene Expression: Decoding and Accuracy

KH Nierhaus - eLS, 2001 - Wiley Online Library
During decoding of the genetic message, the ribosome must select the correct substrate, a
ternary complex aminoacyl‐tRNA–EF‐Tu–GTP, from a large number of almost identical …