Automatic synthesis of physical system differential equation models to a custom network of general processing elements on FPGAs

C Huang, F Vahid, T Givargis - ACM Transactions on Embedded …, 2013 - dl.acm.org
Fast execution of physical system models has various uses, such as simulating physical
phenomena or real-time testing of medical equipment. Physical system models commonly …

A 1.26 Cytomimetic IC Emulating Complex Nonlinear Mammalian Cell Cycle Dynamics: Synthesis, Simulation and Proof-of-Concept Measured Results

A Houssein, KI Papadimitriou… - IEEE Transactions on …, 2015 - ieeexplore.ieee.org
Cytomimetic circuits represent a novel, ultra low-power, continuous-time, continuous-value
class of circuits, capable of mapping on silicon cellular and molecular dynamics modelled by …

ReCSiP: An FPGA‐based general‐purpose biochemical simulator

Y Osana, M Yoshimi, Y Iwaoka, T Kojima… - … in Japan (Part II …, 2007 - Wiley Online Library
Mathematical modeling and simulation of cellular systems are essential to modern biological
researches. However, simulating with software‐based simulators on general‐purpose …

Development of system-on-chip based digital control for power converter application

N Agrawal, S Samanta - 2018 IEEE International Conference …, 2018 - ieeexplore.ieee.org
Development of digital controller requires the control platform to achieve the desired
performance. Implementation of the complex algorithm needs the high computation …

A framework for ODE-based multimodel biochemical simulations on an FPGAs

Y Osana, T Fukushima, M Yoshimi… - … Conference on Field …, 2005 - ieeexplore.ieee.org
Today, mathematical modeling and simulation of biochemical pathways take a major role in
biological researches. However, modern microprocessors cannot provide enough …

Performance evaluation of an FPGA-based biochemical simulator ReCSiP

H Amano, N Kitano, N Iwanaga… - … Conference on Field …, 2006 - ieeexplore.ieee.org
ReCSiP is an FPGA-based biochemical simulator to accelerate kinetic simulations of
biochemical pathways. Biochemical models are described as a set of ordinary differential …

A combining technique of rate law functions for a cost-effective reconfigurable biological simulator

H Yamada, N Iwanaga, Y Shibata… - … Conference on Field …, 2007 - ieeexplore.ieee.org
In order to simulate large scale biological models with a reconfigurable FPGA-based
biochemical simulator system, reduction of required resources are essential. This paper …

Automatic pipeline construction focused on similarity of rate law functions for an FPGA-based biochemical simulator

H Yamada, Y Ogawa, T Ooya, T Ishimori… - IPSJ Transactions on …, 2010 - jstage.jst.go.jp
For FPGA-based scientific simulation systems, hardware design technique that can reduce
required amount of hardware resources is a key issue, since the size of simulation target is …

A modular approach to heterogeneous biochemical model simulation on an FPGA

H Yamada, Y Osana, T Ishimori, T Ooya… - 2009 International …, 2009 - ieeexplore.ieee.org
Mathematical modeling and simulation of cellular systems are important processes in
modern life science, to understand the behavior of life as a system. Kinetic model of a …

Hardware simulation of yeast glycolytic oscillations

JE Duarte, J Velasco-Medina… - 2011 IEEE International …, 2011 - ieeexplore.ieee.org
This paper presents the design of a hardware simulator of biological processes described by
chemical-kinetic equations. The simulator is made up of processing elements that use …