Third-generation sequencing in the clinical laboratory: exploring the advantages and challenges of nanopore sequencing

LM Petersen, IW Martin, WE Moschetti… - Journal of clinical …, 2019 - Am Soc Microbiol
Metagenomic sequencing for infectious disease diagnostics is an important tool that holds
promise for use in the clinical laboratory. Challenges for implementation so far include high …

The use of next generation sequencing for improving food safety: Translation into practice

B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …

[HTML][HTML] Bioprospecting culturable and unculturable microbial consortia through metagenomics for bioremediation

AK Wani, N Akhtar, N Naqash, C Chopra… - Cleaner Chemical …, 2022 - Elsevier
With the enormous increase in population and industrial network, the harmful pollutants
affecting biota have also escalated. The pollutants are consumed by living organisms …

Effectiveness of conventional crop improvement strategies vs. omics

M Tahir ul Qamar, A Faryad, A Bari, B Zahid… - … , climate, plant and …, 2020 - Springer
World's population is increasing exponentially and it is expected to be doubled by the year
2050. In many developing countries and rural areas, malnourishment is also making the …

Next-generation sequencing in the diagnosis of viral encephalitis: sensitivity and clinical limitations

K Perlejewski, I Bukowska-Ośko, M Rydzanicz… - Scientific reports, 2020 - nature.com
Identification of pathogens causing viral encephalitis remains challenging, and in over 50%
of cases the etiologic factor remains undetermined. Next-generation sequencing (NGS) …

Metagenomic Signatures of Gut Infections Caused by Different Escherichia coli Pathotypes

A Peña-Gonzalez, MJ Soto-Girón, S Smith… - Applied and …, 2019 - Am Soc Microbiol
Escherichia coli is a leading contributor to infectious diarrhea and child mortality worldwide,
but it remains unknown how alterations in the gut microbiome vary for distinct E. coli …

Metagenomic analysis of the virome of mosquito excreta

AL Ramírez, AMG Colmant, D Warrilow, B Huang… - Msphere, 2020 - Am Soc Microbiol
Traditional screening for arboviruses in mosquitoes requires a priori knowledge and the
utilization of appropriate assays for their detection. Mosquitoes can also provide other …

Serratia marcescens outbreak in a neonatal intensive care unit: new insights from next-generation sequencing applications

C Martineau, X Li, C Lalancette… - Journal of clinical …, 2018 - Am Soc Microbiol
Serratia marcescens is an environmental bacterium that is commonly associated with
outbreaks in neonatal intensive care units (NICUs). Investigations of S. marcescens …

Study of indiscriminate distribution of restrained antimicrobial resistome of different environmental niches

S Bombaywala, NA Dafale, V Jha, A Bajaj… - … Science and Pollution …, 2021 - Springer
Prophylactic usage and high persistent nature of several antibiotics have put selective
pressure on the native microbial population that led to the emergence, propagation, and …

First study case of microbial biocontrol agents isolated from aquaponics through the mining of high-throughput sequencing data to control Pythium aphanidermatum …

G Stouvenakers, S Massart, MH Jijakli - Microbial Ecology, 2023 - Springer
Aquaponics is defined as a sustainable and integrated system that combines fish
aquaculture and hydroponic plant production in the same recirculated water loop. A recent …