Protein design: toward functional metalloenzymes

F Yu, VM Cangelosi, ML Zastrow, M Tegoni… - Chemical …, 2014 - ACS Publications
Protein design is a valuable tool for understanding the fundamental factors that dictate
protein structure and function. The field of protein design has seen significant progress over …

Origins of specificity in protein-DNA recognition

R Rohs, X Jin, SM West, R Joshi… - Annual review of …, 2010 - annualreviews.org
Specific interactions between proteins and DNA are fundamental to many biological
processes. In this review, we provide a revised view of protein-DNA interactions that …

Coordination chemistry of bacterial metal transport and sensing

Z Ma, FE Jacobsen, DP Giedroc - Chemical reviews, 2009 - ACS Publications
The transition or d-block metal ions manganese, iron, cobalt, nickel, copper, zinc and to a
more specialized degree molybdenum, tungsten, and vanadium have been shown to be …

An overview of the structures of protein-DNA complexes

NM Luscombe, SE Austin, HM Berman, JM Thornton - Genome biology, 2000 - Springer
On the basis of a structural analysis of 240 protein-DNA complexes contained in the Protein
Data Bank (PDB), we have classified the DNA-binding proteins involved into eight different …

[HTML][HTML] Crystal structure of a Smad MH1 domain bound to DNA: insights on DNA binding in TGF-β signaling

Y Shi, YF Wang, L Jayaraman, H Yang, J Massagué… - Cell, 1998 - cell.com
The Smad family of proteins, which are frequently targeted by tumorigenic mutations in
cancer, mediate TGF-β signaling from cell membrane to nucleus. The crystal structure of a …

[HTML][HTML] A novel mode of DNA recognition by a β‐sheet revealed by the solution structure of the GCC‐box binding domain in complex with DNA

MD Allen, K Yamasaki, M Ohme‐Takagi… - The EMBO …, 1998 - embopress.org
The 3D solution structure of the GCC‐box binding domain of a protein from Arabidopsis
thaliana in complex with its target DNA fragment has been determined by heteronuclear …

The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: how receptors discriminate between their response elements

JWR Schwabe, L Chapman, JT Finch, D Rhodes - Cell, 1993 - cell.com
The nuclear hormone receptors are a superfamily of ligand-activated DNA-binding
transcription factors. We have determined the crystal structure (at 2.4 A) of the fully specific …

Analysis of the sequence and gene products of the transfer region of the F sex factor

LS Frost, K Ippen-Ihler, RA Skurray - Microbiological reviews, 1994 - Am Soc Microbiol
Bacterial conjugation results in the transfer of DNA of either plasmid or chromosomal origin
between microorganisms. Transfer begins at a defined point in the DNA sequence, usually …

Crystal structure of the breakage–reunion domain of DNA gyrase

JHM Cabral, AP Jackson, CV Smith, N Shikotra… - Nature, 1997 - nature.com
DNA gyrase is a type II DNA topoisomerase from bacteria that introduces supercoils into
DNA,. It catalyses the breakage of a DNA duplex (the G segment), the passage of another …

Recognition of specific DNA sequences

CW Garvie, C Wolberger - Molecular cell, 2001 - cell.com
Proteins that recognize specific DNA sequences play a central role in the regulation of
transcription. The tremendous increase in structural information on protein-DNA complexes …