An update on chloroplast genomes

V Ravi, JP Khurana, AK Tyagi, P Khurana - Plant systematics and …, 2008 - Springer
Plant cells possess two more genomes besides the central nuclear genome: the
mitochondrial genome and the chloroplast genome (or plastome). Compared to the gigantic …

NOVOPlasty: de novo assembly of organelle genomes from whole genome data

N Dierckxsens, P Mardulyn, G Smits - Nucleic acids research, 2017 - academic.oup.com
The evolution in next-generation sequencing (NGS) technology has led to the development
of many different assembly algorithms, but few of them focus on assembling the organelle …

Plastid genomics in horticultural species: importance and applications for plant population genetics, evolution, and biotechnology

M Rogalski, L do Nascimento Vieira, HP Fraga… - Frontiers in plant …, 2015 - frontiersin.org
During the evolution of the eukaryotic cell, plastids, and mitochondria arose from an
endosymbiotic process, which determined the presence of three genetic compartments into …

Contemporaneous and recent radiations of the world's major succulent plant lineages

M Arakaki, PA Christin, R Nyffeler… - Proceedings of the …, 2011 - National Acad Sciences
The cacti are one of the most celebrated radiations of succulent plants. There has been
much speculation about their age, but progress in dating cactus origins has been hindered …

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

RK Jansen, Z Cai, LA Raubeson… - Proceedings of the …, 2007 - National Acad Sciences
Angiosperms are the largest and most successful clade of land plants with> 250,000 species
distributed in nearly every terrestrial habitat. Many phylogenetic studies have been based on …

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates

ML Weng, JC Blazier, M Govindu… - Molecular biology and …, 2014 - academic.oup.com
Geraniaceae plastid genomes are highly rearranged, and each of the four genera already
sequenced in the family has a distinct genome organization. This study reports plastid …

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

J Qian, J Song, H Gao, Y Zhu, J Xu, X Pang, H Yao… - PloS one, 2013 - journals.plos.org
Salvia miltiorrhiza is an important medicinal plant with great economic and medicinal value.
The complete chloroplast (cp) genome sequence of Salvia miltiorrhiza, the first sequenced …

Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences

H Jiang, J Tian, J Yang, X Dong, Z Zhong… - BMC Plant …, 2022 - Springer
Abstract Background Polystachya Hook. is a large pantropical orchid genus (c. 240 species)
distributed in Africa, southern Asia and the Americas, with the center of diversity in Africa …

Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species

Y Yang, T Zhou, D Duan, J Yang, L Feng… - Frontiers in plant …, 2016 - frontiersin.org
Quercus is considered economically and ecologically one of the most important genera in
the Northern Hemisphere. Oaks are taxonomically perplexing because of shared …

Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

JB Yang, M Tang, HT Li, ZR Zhang, DZ Li - BMC evolutionary biology, 2013 - Springer
Background Cymbidium orchids, including some 50 species, are the famous flowers, and
they possess high commercial value in the floricultural industry. Furthermore, the values of …