Scalable functional assays for the interpretation of human genetic variation

D Tabet, V Parikh, P Mali, FP Roth… - Annual Review of …, 2022 - annualreviews.org
Scalable sequence–function studies have enabled the systematic analysis and cataloging of
hundreds of thousands of coding and noncoding genetic variants in the human genome …

Proteingym: Large-scale benchmarks for protein fitness prediction and design

P Notin, A Kollasch, D Ritter… - Advances in …, 2024 - proceedings.neurips.cc
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins to address our most pressing …

Automated patch clamp in drug discovery: major breakthroughs and innovation in the last decade

A Obergrussberger, S Friis… - Expert opinion on drug …, 2021 - Taylor & Francis
Patch-clamp electrophysiology remains an important technique in studying ion channels;
indeed, it is still considered the gold standard since it was first described by Neher and …

Determinants of trafficking, conduction, and disease within a K+ channel revealed through multiparametric deep mutational scanning

W Coyote-Maestas, D Nedrud, Y He, D Schmidt - Elife, 2022 - elifesciences.org
A long-standing goal in protein science and clinical genetics is to develop quantitative
models of sequence, structure, and function relationships to understand how mutations …

Expression of SARS-CoV-2 Nonstructural Proteins 3 and 4 Can Tune the Unfolded Protein Response in Cell Culture

JP Davies, A Sivadas, KR Keller… - Journal of Proteome …, 2023 - ACS Publications
Coronaviruses (CoV), including SARS-CoV-2, modulate host proteostasis through the
activation of stress-responsive signaling pathways such as the Unfolded Protein Response …

[HTML][HTML] Proteingym: Large-scale benchmarks for protein design and fitness prediction

P Notin, AW Kollasch, D Ritter, L van Niekerk, S Paul… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Predicting the effects of mutations in proteins is critical to many applications, from
understanding genetic disease to designing novel proteins that can address our most …

Phenotypic screening models for rapid diagnosis of genetic variants and discovery of personalized therapeutics

CE Hopkins, T Brock, TR Caulfield… - Molecular aspects of …, 2023 - Elsevier
Precision medicine strives for highly individualized treatments for disease under the notion
that each individual's unique genetic makeup and environmental exposures imprints upon …

The suitability of high throughput automated patch clamp for physiological applications

A Obergrussberger, I Rinke‐Weiß… - The Journal of …, 2022 - Wiley Online Library
Although automated patch clamp (APC) devices have been around for many years and have
become an integral part of many aspects of drug discovery, high throughput instruments with …

A massively parallel assay accurately discriminates between functionally normal and abnormal variants in a hotspot domain of KCNH2

CA Ng, R Ullah, J Farr, AP Hill, KA Kozek… - The American Journal of …, 2022 - cell.com
Many genes, including KCNH2, contain" hotspot" domains associated with a high density of
variants associated with disease. This has led to the suggestion that variant location can be …

[HTML][HTML] Molecular and cellular context influences SCN8A variant function

CG Vanoye, TV Abramova, JM DeKeyser… - JCI …, 2024 - pmc.ncbi.nlm.nih.gov
Pathogenic variants in SCN8A, which encodes the voltage-gated sodium (Na V) channel Na
V 1.6, associate with neurodevelopmental disorders, including developmental and epileptic …