Mechanism and regulation of the nonsense-mediated decay pathway

N Hug, D Longman, JF Cáceres - Nucleic acids research, 2016 - academic.oup.com
The Nonsense-mediated mRNA decay (NMD) pathway selectively degrades mRNAs
harboring premature termination codons (PTCs) but also regulates the abundance of a large …

Nonsense-mediated mRNA decay: degradation of defective transcripts is only part of the story

F He, A Jacobson - Annual review of genetics, 2015 - annualreviews.org
Nonsense-mediated mRNA decay (NMD) is a eukaryotic surveillance mechanism that
monitors cytoplasmic mRNA translation and targets mRNAs undergoing premature …

[HTML][HTML] Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2

S Chakrabarti, U Jayachandran, F Bonneau, F Fiorini… - Molecular cell, 2011 - cell.com
Upf1 is a crucial factor in nonsense-mediated mRNA decay, the eukaryotic surveillance
pathway that degrades mRNAs containing premature stop codons. The essential RNA …

The branched nature of the nonsense-mediated mRNA decay pathway

Z Yi, M Sanjeev, G Singh - Trends in Genetics, 2021 - cell.com
Nonsense-mediated mRNA decay (NMD) is a conserved translation-coupled quality control
mechanism in all eukaryotes that regulates the expression of a significant fraction of both the …

Mammalian UPF3A and UPF3B can activate nonsense‐mediated mRNA decay independently of their exon junction complex binding

Z Yi, RM Arvola, S Myers, CN Dilsavor… - The EMBO …, 2022 - embopress.org
Nonsense‐mediated mRNA decay (NMD) is governed by the three conserved factors—
UPF1, UPF2, and UPF3. While all three are required for NMD in yeast, UPF3B is …

Posttranscriptional control of the stem cell and neurogenic programs by the nonsense-mediated RNA decay pathway

CH Lou, A Shao, EY Shum, JL Espinoza, L Huang… - Cell reports, 2014 - cell.com
The mechanisms dictating whether a cell proliferates or differentiates have undergone
intense scrutiny, but they remain poorly understood. Here, we report that UPF1, a central …

Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs

D Zünd, AR Gruber, M Zavolan… - Nature structural & …, 2013 - nature.com
Recruitment of the UPF1 nonsense-mediated mRNA decay (NMD) factor to target mRNAs
was initially proposed to occur through interaction with release factors at terminating …

High-resolution profiling of NMD targets in yeast reveals translational fidelity as a basis for substrate selection

A Celik, R Baker, F He, A Jacobson - Rna, 2017 - rnajournal.cshlp.org
Nonsense-mediated mRNA decay (NMD) plays an important role in eukaryotic gene
expression, yet the scope and the defining features of NMD-targeted transcripts remain …

Nonsense-mediated mRNA decay (NMD) in animal embryogenesis: to die or not to die, that is the question

J Hwang, LE Maquat - Current opinion in genetics & development, 2011 - Elsevier
Nonsense-mediated mRNA decay (NMD) is a well-studied cellular quality-control pathway. It
decreases the half-lives of eukaryotic mRNAs that aberrantly contain premature termination …

Unique aspects of plant nonsense-mediated mRNA decay

O Shaul - Trends in plant science, 2015 - cell.com
Nonsense-mediated mRNA Decay (NMD) is a eukaryotic quality-control mechanism that
governs the stability of both aberrant and normal transcripts. Although plant and mammalian …