What are microsatellites and how to choose the best tool: a user-friendly review of SSR and 74 SSR mining tools

SIA Alves, CWD Dantas, DB Macedo… - Frontiers in …, 2024 - frontiersin.org
Microsatellites, also known as SSR or STR, are essential molecular markers in genomic
research, playing crucial roles in genetic mapping, population genetics, and evolutionary …

Dig-up Primers: A Pipeline for Identification of Polymorphic Microsatellites Loci within Assemblies of Related Species

A Turudić, Z Liber, M Grdiša, J Jakše, F Varga… - International journal of …, 2024 - mdpi.com
Simple sequence repeats (SSRs) have become one of the most popular molecular markers
and are used in numerous fields, including conservation genetics, population genetic …

A pipeline for effectively developing highly polymorphic simple sequence repeats markers based on multi‐sample genomic data

H Wang, S Gao, Y Liu, P Wang, Z Zhang… - Ecology and …, 2022 - Wiley Online Library
Simple sequence repeats (SSRs) are widely used genetic markers in ecology, evolution,
and conservation even in the genomics era, while a general limitation to their application is …

Novel Microsatellite Loci, Cross-Species Validation of Multiplex Assays, and By-Catch Mitochondrial Genomes on Ochthebius Beetles from Supratidal Rockpools

AJ García-Meseguer, A Villastrigo, JM Mirón-Gatón… - Insects, 2023 - mdpi.com
Simple Summary Supratidal rockpools stand out as some of the most extreme environments
on the planet. These pools are exposed to the wave's action, fluctuations in sea level …

Expression Profiles of Microsatellites in Fruit Tissues of Akebia trifoliata and Development of Efficient EST-SSR Markers

W Chen, H Yang, S Zhong, J Zhu, Q Zhang, Z Li, T Ren… - Genes, 2022 - mdpi.com
Akebia trifoliat a, a member of the family Lardizabalaceae, has high exploitation potential for
multiple economic purposes, so genetic improvements to meet requirements for commercial …

Characterization of Microsatellites in the Akebia trifoliata Genome and Their Transferability and Development of a Whole Set of Effective, Polymorphic, and Physically …

S Zhong, W Chen, H Yang, J Shen, T Ren… - Frontiers in Plant …, 2022 - frontiersin.org
Akebia trifoliata is a perennial climbing woody liana plant with a high potential for
commercial exploitation and theoretical research. Similarly, microsatellites (simple …

[PDF][PDF] 儿童肺炎支原体感染特征及危险因素分析

高霏, 蒋圣露, 郭笋 - 中国病原生物学杂志, 2022 - cjpb.org
目的分析儿童肺炎支原体感染临床特点及危险因素, 指导临床抗感染防控. 方法收集患儿咽拭子
样本, 采用Nest-PCR 法扩增验证肺炎支原体感染, 并依据23SrRNA 序列变异情况分析菌株耐药 …

Automating microsatellite screening and primer design from multi-individual libraries using Micro-Primers

F Alves, FMS Martins, M Areias, A Muñoz-Mérida - Scientific Reports, 2022 - nature.com
Abstract Analysis of intra-and inter-population diversity has become important for defining
the genetic status and distribution patterns of a species and a powerful tool for conservation …

Genotypic detection of barriers to rat dispersal: Rattus rattus behind a peninsula predator-proof fence

S Yarita, M Morgan-Richards, SA Trewick - Biological Invasions, 2023 - Springer
Clear delimitation of management units is essential for effective management of invasive
species. Analysis of population genetic structure of target species can improve identification …

Assessment of genetic diversity and population structure of Corema album accessions from the Atlantic coastal dunes of Portugal

P Brás de Oliveira, AR Varela, MJ Silva… - Journal of Berry …, 2024 - journals.sagepub.com
Background Corema album, a wild shrub endemic to the Atlantic coastal dunes of Iberian
Peninsula, has important ecological and medicinal value. Corema album has been listed as …