[图书][B] Phylogeny: discrete and random processes in evolution

M Steel - 2016 - SIAM
The idea that all life on earth traces back to a common origin dates back at least to Charles
Darwin's Origin of Species. Ever since, biologists have tried to piece together parts of this …

Advances in bioinformatic approaches to tardigrade phylogeny

AA Erözden, N Tavsanli, M Çalışkan - Computational Biology and …, 2024 - Elsevier
The quest to discover the evolutionary relationships of organisms is an evolving, long-time
topic of research. Such research gave rise to many different taxonomic databases and …

A memetic algorithm based on an NSGA-II scheme for phylogenetic tree inference

M Villalobos-Cid, M Dorn… - IEEE transactions on …, 2018 - ieeexplore.ieee.org
Phylogenetic inference allows building a hypothesis about the evolutionary relationships
between a group of species, which is usually represented as a tree. The phylogenetic …

The potential role of androgenesis in cytoplasmic–nuclear phylogenetic discordance

SM Hedtke, DM Hillis - Systematic Biology, 2011 - academic.oup.com
In many organisms, gene trees based on nuclear markers and those based on cytoplasmic
markers (chloroplasts or mitochondria) sometimes indicate quite different relationships …

Pusillimonas thiosulfatoxidans sp. nov., a thiosulfate oxidizer isolated from activated sludge

HW Koh, MS Song, KT Do, H Kim… - … Journal of Systematic …, 2019 - microbiologyresearch.org
A Gram-stain-negative, motile bacterium, designated strain YE3T, was isolated from
activated sludge obtained from a municipal wastewater treatment plant in Daejeon …

On the complexity of computing MP distance between binary phylogenetic trees

S Kelk, M Fischer - Annals of Combinatorics, 2017 - Springer
Within the field of phylogenetics there is great interest in distance measures to quantify the
dissimilarity of two trees. Recently, a new distance measure has been proposed: the …

Can we avoid “SIN” in the house of “no common mechanism”?

M Steel - Systematic biology, 2011 - academic.oup.com
In “no common mechanism”(NCM) models of character evolution, each character can evolve
on a phylogenetic tree under a partially or totally separate process (eg, with its own branch …

The size of the character state space affects the occurrence and detection of homoplasy: modelling the probability of incompatibility for unordered phylogenetic …

JH Cuthill - Journal of Theoretical Biology, 2015 - Elsevier
This study models the probability of incompatibility versus compatibility for binary or
unordered multistate phylogenetic characters, by treating the allocation of taxa to character …

Burkholderia alba sp. nov., isolated from a soil sample on Halla mountain in Jeju island

JW Lee, YE Kim, SJ Park - Journal of Microbiology, 2018 - Springer
A rod-shaped, round and white colony-forming strain AD18 T was isolated from the soil on
Halla mountain in Jeju Island, Republic of Korea. Comparative analysis of 16S rRNA gene …

Arthrobacter dokdonellae sp. nov., isolated from a plant of the genus Campanula

HW Koh, MS Kang, KE Lee, EY Lee, H Kim… - Journal of …, 2019 - Springer
A Gram-stain-positive, oxidase-and catalase-positive motile, aerobic, and rod-shaped
bacterial strain, designated as DCT-5 T, was isolated from a native plant belonging to the …