[HTML][HTML] The role of nutrition in COVID-19 susceptibility and severity of disease: a systematic review

PT James, Z Ali, AE Armitage, A Bonell, C Cerami… - The Journal of …, 2021 - Elsevier
Background Many nutrients have powerful immunomodulatory actions with the potential to
alter susceptibility to coronavirus disease 2019 (COVID-19) infection, progression to …

Metapredict: a fast, accurate, and easy-to-use predictor of consensus disorder and structure

RJ Emenecker, D Griffith, AS Holehouse - Biophysical journal, 2021 - cell.com
Intrinsically disordered proteins and protein regions make up a substantial fraction of many
proteomes in which they play a wide variety of essential roles. A critical first step in …

New insights into KLFs and SOXs in cancer pathogenesis, stemness, and therapy

L Zeng, Y Zhu, CS Moreno, Y Wan - Seminars in cancer biology, 2023 - Elsevier
Despite the development of cancer therapies, the success of most treatments has been
impeded by drug resistance. The crucial role of tumor cell plasticity has emerged recently in …

High-throughput functional characterization of combinations of transcriptional activators and repressors

AX Mukund, J Tycko, SJ Allen, SA Robinson… - Cell Systems, 2023 - cell.com
Despite growing knowledge of the functions of individual human transcriptional effector
domains, much less is understood about how multiple effector domains within the same …

Harnessing UBR5 for targeted protein degradation of key transcriptional regulators

AM Taherbhoy, DL Daniels - Trends in Pharmacological Sciences, 2023 - cell.com
Targeted protein degradation (TPD) has opened the door for drugging transcriptional
regulators, yet the number of proteins targeted and E3 ligases utilized remain limited. Here …

Single-cell quantitative proteomic analysis of human oocyte maturation revealed high heterogeneity in in vitro–matured oocytes

Y Guo, L Cai, X Liu, L Ma, H Zhang, B Wang… - Molecular & Cellular …, 2022 - ASBMB
Oocyte maturation is pertinent to the success of in vitro maturation (IVM), which is used to
overcome female infertility, and produced over 5000 live births worldwide. However, the …

The in vivo interaction landscape of histones H3. 1 and H3. 3

R Siddaway, S Milos, É Coyaud, HY Yun… - Molecular & Cellular …, 2022 - ASBMB
Chromatin structure, transcription, DNA replication, and repair are regulated via locus-
specific incorporation of histone variants and posttranslational modifications that guide …

An intrinsically disordered transcription activation domain increases the DNA binding affinity and reduces the specificity of NFκB p50/RelA

HER Baughman, D Narang, W Chen… - Journal of Biological …, 2022 - ASBMB
Many transcription factors contain intrinsically disordered transcription activation domains
(TADs), which mediate interactions with coactivators to activate transcription. Historically …

Structural studies of SALL family protein zinc finger cluster domains in complex with DNA reveal preferential binding to an AATA tetranucleotide motif

W Ru, T Koga, X Wang, Q Guo, MD Gearhart… - Journal of Biological …, 2022 - ASBMB
The Spalt-like 4 transcription factor (SALL4) plays an essential role in controlling the
pluripotent property of embryonic stem cells via binding to AT-rich regions of genomic DNA …

Flexibility of flanking DNA is a key determinant of transcription factor affinity for the core motif

D Ghoshdastidar, M Bansal - Biophysical Journal, 2022 - cell.com
Selective gene regulation is mediated by recognition of specific DNA sequences by
transcription factors (TFs). The extremely challenging task of searching out specific cognate …