cis-Regulatory elements encode the genomic blueprints that ensure the proper
spatiotemporal patterning of gene expression necessary for appropriate development and …

Chromatin plays a crucial role in genome compaction and is fundamental for regulating
multiple nuclear processes. Nucleosomes, the basic building blocks of chromatin, are …

Transcription factors (TFs) play a critical role in determining cell fate decisions by integrating
developmental and environmental signals through binding to specific cis-regulatory …

The emergence of herbicide‐resistant weeds is a significant threat to modern agriculture.
Cross resistance, a phenomenon where resistance to one herbicide confers resistance to …

The TEOSINTE BRANCHED1 (TBI1), CYCLOIDEA (CYC), and PROLIFERATING CELL
NUCLEAR ANTIGEN FACTORS (PCF1 and PCF2) proteins truncated as TCP transcription …

Gene regulatory networks (GRNs) represent the interactions between transcription factors
(TF) and their target genes. Plant GRNs control transcriptional programs involved in growth …

Mutations in cis-regulatory regions play an important role in the domestication and
improvement of crops by altering gene expression. However, assessing the in vivo impact of …

Background Many plant species exhibit genetic variation for coping with environmental
stress. However, there are still limited approaches to effectively uncover the genomic region …

Rational design of plant cis-regulatory DNA sequences without expert intervention or prior
domain knowledge is still a daunting task. Here, we developed PhytoExpr, a deep learning …

Elucidating the relationship between non-coding regulatory element sequences and gene
expression is crucial for understanding gene regulation and genetic variation. We explored …