The evolution of the pegasus workflow management software

E Deelman, K Vahi, M Rynge, R Mayani… - … in Science & …, 2019 - ieeexplore.ieee.org
Since 2001, the Pegasus Workflow Management System has evolved into a robust and
scalable system that automates the execution of a number of complex applications running …

Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing

B Valliyodan, AV Brown, J Wang, G Patil, Y Liu… - Scientific Data, 2021 - nature.com
We report characteristics of soybean genetic diversity and structure from the resequencing of
481 diverse soybean accessions, comprising 52 wild (Glycine soja) selections and 429 …

Bioinformatics for plant and agricultural discoveries in the age of multiomics: A review and case study of maize nodal root growth under water deficit

J Wang, S Sidharth, S Zeng, Y Jiang… - Physiologia …, 2022 - Wiley Online Library
Advances in next‐generation sequencing and other high‐throughput technologies have
facilitated multiomics research, such as genomics, epigenomics, transcriptomics …

Reinforcement learning-driven data-intensive workflow scheduling for volunteer edge-cloud

M Mounesan, M Lemus, H Yeddulapalli… - 2024 IEEE 8th …, 2024 - ieeexplore.ieee.org
In recent times, Volunteer Edge-Cloud (VEC) has gained traction as a cost-effective,
community computing paradigm to support data-intensive scientific workflows. However, due …

Serverless Containers–rising viable approach to Scientific Workflows

K Burkat, M Pawlik, B Balis, M Malawski… - 2021 IEEE 17th …, 2021 - ieeexplore.ieee.org
The increasing popularity of the serverless computing approach has led to the emergence of
new cloud infrastructures working in Container-as-a-Service (CaaS) model like AWS …

Maize carbohydrate partitioning defective33 encodes an MCTP protein and functions in sucrose export from leaves

TM Tran, TJ McCubbin, S Bihmidine, BT Julius… - Molecular plant, 2019 - cell.com
To sustain plant growth, development, and crop yield, sucrose must be transported from
leaves to distant parts of the plant, such as seeds and roots. To identify genes that regulate …

Linkage analysis and residual heterozygotes derived near isogenic lines reveals a novel protein quantitative trait loci from a Glycine soja accession

Y Yang, TC La, JD Gillman, Z Lyu, T Joshi… - Frontiers in Plant …, 2022 - frontiersin.org
Modern soybean [Glycine max (L.) Merr] cultivars have low overall genetic variation due to
repeated bottleneck events that arose during domestication and from selection strategies …

A novel Synthetic phenotype association study approach reveals the landscape of association for genomic variants and phenotypes

M Škrabišová, N Dietz, S Zeng, YO Chan… - Journal of Advanced …, 2022 - Elsevier
Abstract Introduction Genome-Wide Association Studies (GWAS) identify tagging variants in
the genome that are statistically associated with the phenotype because of their linkage …

Molecular tools for detecting Pdh1 can improve soybean breeding efficiency by reducing yield losses due to pod shatter

C Miranda, C Culp, M Škrabišová, T Joshi, F Belzile… - Molecular …, 2019 - Springer
Pod shattering is an ancestral trait that promotes seed dispersal; however, shattering can
have substantial yield losses in cultivated soybean. During the improvement process …

Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes

R Deshmukh, N Rana, Y Liu, S Zeng… - Physiologia …, 2021 - Wiley Online Library
Transporters, a class of membrane proteins that facilitate exchange of solutes including
diverse molecules and ions across the cellular membrane, are vital component for the …