Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis
O Bonham-Carter, J Steele… - Briefings in bioinformatics, 2014 - academic.oup.com
Modern sequencing and genome assembly technologies have provided a wealth of data,
which will soon require an analysis by comparison for discovery. Sequence alignment, a …
which will soon require an analysis by comparison for discovery. Sequence alignment, a …
Parallel protein multiple sequence alignment approaches: a systematic literature review
SH Almanza-Ruiz, A Chavoya… - The Journal of …, 2023 - Springer
Multiple sequence alignment approaches refer to algorithmic solutions for the alignment of
biological sequences. Since multiple sequence alignment has exponential time complexity …
biological sequences. Since multiple sequence alignment has exponential time complexity …
A scalable multiple pairwise protein sequence alignment acceleration using hybrid CPU–GPU approach
Bioinformatics is an interdisciplinary field that applies trending techniques in information
technology, mathematics, and statistics in studying large biological data. Bioinformatics …
technology, mathematics, and statistics in studying large biological data. Bioinformatics …
High performance computing improvements on bioinformatics consistency-based multiple sequence alignment tools
Abstract Multiple Sequence Alignment (MSA) is essential for a wide range of applications in
Bioinformatics. Traditionally, the alignment accuracy was the main metric used to evaluate …
Bioinformatics. Traditionally, the alignment accuracy was the main metric used to evaluate …
A hybrid CPU-GPU implementation to accelerate multiple pairwise protein sequence alignment
Bioinformatics is an interdisciplinary field that applies techniques from computer science,
statistics and engineering to guide in the study of large biological data. Protein structure and …
statistics and engineering to guide in the study of large biological data. Protein structure and …
Scalability and accuracy improvements of consistency-based multiple sequence alignment tools
Multiple sequence alignment (MSA) is one of the most useful tools in bioinformatics.
However, the growth of sequencing data imposes further difficulties for aligning it with …
However, the growth of sequencing data imposes further difficulties for aligning it with …
Recovering accuracy methods for scalable consistency library
Multiple sequence alignment (MSA) is crucial for high-throughput next generation
sequencing applications. Large-scale alignments with thousands of sequences are …
sequencing applications. Large-scale alignments with thousands of sequences are …
Patterns and Signals of Biology: An Emphasis On The Role of Post Translational Modifications in Proteomes for Function and Evolutionary Progression
ON Bonham-Carter - 2016 - search.proquest.com
After synthesis, a protein is still immature until it has been customized for a specific task. Post-
translational modifications (PTMs) are steps in biosynthesis to perform this customization of …
translational modifications (PTMs) are steps in biosynthesis to perform this customization of …
[PDF][PDF] Recovering accuracy methods for scalable consistency library
J Lladós Segura, F Guirado Fernández, F Cores Prado… - 2015 - repositori.udl.cat
Multiple sequence alignment (MSA) is crucial for high-throughput next generation
sequencing applications. Large-scale alignments with thousands of sequences are …
sequencing applications. Large-scale alignments with thousands of sequences are …
[PDF][PDF] High Performance computing improvements on bioinformatics consistency-based multiple sequence alignment tools
M Orobitg Cortada, F Guirado Fernández… - 2014 - repositori.udl.cat
Abstract Multiple Sequence Alignment (MSA) is essential for a wide range of applications in
Bioinformatics. Traditionally, the alignment accuracy was the main metric used to evaluate …
Bioinformatics. Traditionally, the alignment accuracy was the main metric used to evaluate …