SOX4: The unappreciated oncogene

CS Moreno - Seminars in cancer biology, 2020 - Elsevier
SOX4 is an essential developmental transcription factor that regulates stemness,
differentiation, progenitor development, and multiple developmental pathways including …

U1 snRNP regulates cancer cell migration and invasion in vitro

JM Oh, CC Venters, C Di, AM Pinto, L Wan… - Nature …, 2020 - nature.com
Stimulated cells and cancer cells have widespread shortening of mRNA 3'-untranslated
regions (3'UTRs) and switches to shorter mRNA isoforms due to usage of more proximal …

[HTML][HTML] Expression and putative role of mitochondrial transport proteins in cancer

O Lytovchenko, ERS Kunji - Biochimica et Biophysica Acta (BBA) …, 2017 - Elsevier
Cancer cells undergo major changes in energy and biosynthetic metabolism. One of them is
the Warburg effect, in which pyruvate is used for fermentation rather for oxidative …

[HTML][HTML] Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies

BD Lehmann, JA Bauer, X Chen… - The Journal of …, 2011 - Am Soc Clin Investig
Intratumor heterogeneity is a major clinical problem because tumor cell subtypes display
variable sensitivity to therapeutics and may play different roles in progression. We previously …

[HTML][HTML] Genome-wide analysis of pre-mRNA 3′ end processing reveals a decisive role of human cleavage factor I in the regulation of 3′ UTR length

G Martin, AR Gruber, W Keller, M Zavolan - Cell reports, 2012 - cell.com
Through alternative polyadenylation, human mRNAs acquire longer or shorter 3′
untranslated regions, the latter typically associated with higher transcript stability and …

EZH2 inhibition sensitizes BRG1 and EGFR mutant lung tumours to TopoII inhibitors

CM Fillmore, C Xu, PT Desai, JM Berry, SP Rowbotham… - Nature, 2015 - nature.com
Non-small-cell lung cancer is the leading cause of cancer-related death worldwide.
Chemotherapies such as the topoisomerase II (TopoII) inhibitor etoposide effectively reduce …

A three-gene model to robustly identify breast cancer molecular subtypes

B Haibe-Kains, C Desmedt, S Loi… - Journal of the …, 2012 - academic.oup.com
Abstract Background Single sample predictors (SSPs) and Subtype classification models
(SCMs) are gene expression–based classifiers used to identify the four primary molecular …

Claudin-low breast cancers: clinical, pathological, molecular and prognostic characterization

R Sabatier, P Finetti, A Guille, J Adelaide, M Chaffanet… - Molecular cancer, 2014 - Springer
Background The lastly identified claudin-low (CL) subtype of breast cancer (BC) remains
poorly described as compared to the other molecular subtypes. We provide a …

Large-scale RNA-Seq transcriptome analysis of 4043 cancers and 548 normal tissue controls across 12 TCGA cancer types

L Peng, XW Bian, DK Li, C Xu, GM Wang, QY Xia… - Scientific reports, 2015 - nature.com
Abstract The Cancer Genome Atlas (TCGA) has accrued RNA-Seq-based transcriptome
data for more than 4000 cancer tissue samples across 12 cancer types, translating these …

Cellular network entropy as the energy potential in Waddington's differentiation landscape

CRS Banerji, D Miranda-Saavedra, S Severini… - Scientific reports, 2013 - nature.com
Differentiation is a key cellular process in normal tissue development that is significantly
altered in cancer. Although molecular signatures characterising pluripotency and …