A review of cell-based computational modeling in cancer biology

J Metzcar, Y Wang, R Heiland… - JCO clinical cancer …, 2019 - ascopubs.org
Cancer biology involves complex, dynamic interactions between cancer cells and their
tissue microenvironments. Single-cell effects are critical drivers of clinical progression …

Simulating cancer growth with multiscale agent-based modeling

Z Wang, JD Butner, R Kerketta, V Cristini… - Seminars in cancer …, 2015 - Elsevier
There have been many techniques developed in recent years to in silico model a variety of
cancer behaviors. Agent-based modeling is a specific discrete-based hybrid modeling …

[HTML][HTML] PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems

A Ghaffarizadeh, R Heiland, SH Friedman… - PLoS computational …, 2018 - journals.plos.org
Many multicellular systems problems can only be understood by studying how cells move,
grow, divide, interact, and die. Tissue-scale dynamics emerge from systems of many …

[HTML][HTML] Simulating tissue mechanics with agent-based models: concepts, perspectives and some novel results

P Van Liedekerke, MM Palm, N Jagiella… - Computational particle …, 2015 - Springer
In this paper we present an overview of agent-based models that are used to simulate
mechanical and physiological phenomena in cells and tissues, and we discuss underlying …

Impact of metabolic heterogeneity on tumor growth, invasion, and treatment outcomes

M Robertson-Tessi, RJ Gillies, RA Gatenby… - Cancer research, 2015 - AACR
Histopathologic knowledge that extensive heterogeneity exists between and within tumors
has been confirmed and deepened recently by molecular studies. However, the impact of …

[HTML][HTML] Chaste: an open source C++ library for computational physiology and biology

GR Mirams, CJ Arthurs, MO Bernabeu… - PLoS computational …, 2013 - journals.plos.org
Chaste—C ancer, H eart A nd S oft T issue E nvironment—is an open source C++ library for
the computational simulation of mathematical models developed for physiology and biology …

Mathematical modeling of tumor growth and treatment

H Enderling, M AJ Chaplain - Current pharmaceutical design, 2014 - ingentaconnect.com
Using mathematical models to simulate dynamic biological processes has a long history.
Over the past couple of decades or so, quantitative approaches have also made their way …

A computational multiscale agent-based model for simulating spatio-temporal tumour immune response to PD1 and PDL1 inhibition

C Gong, O Milberg, B Wang, P Vicini… - Journal of the …, 2017 - royalsocietypublishing.org
When the immune system responds to tumour development, patterns of immune infiltrates
emerge, highlighted by the expression of immune checkpoint-related molecules such as …

[HTML][HTML] In silico modelling of cancer nanomedicine, across scales and transport barriers

NR Stillman, M Kovacevic, I Balaz… - NPJ Computational …, 2020 - nature.com
Nanoparticles promise to improve the treatment of cancer through their increasingly
sophisticated functionalisations and ability to accumulate in certain tumours. Yet recent work …

[HTML][HTML] Cellular potts modeling of tumor growth, tumor invasion, and tumor evolution

A Szabó, RMH Merks - Frontiers in oncology, 2013 - frontiersin.org
Despite a growing wealth of available molecular data, the growth of tumors, invasion of
tumors into healthy tissue, and response of tumors to therapies are still poorly understood …